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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTGGATACATTTAACACCGCAATTGTCTCTCCCGTATATTATGTCATGTTCACAACTCTGACCATTATTGCTAGTGTGATAATGTTTAAGgtatcatgacatattcatattcttggattcatttggtgctatatggaaggtcttcttttgttgaaagcttgactttttggttgctttaattttctgtgcag

Basic information

species Glycine max
transcript GLYMA04G00690.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00690.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
GCACTGGATACATTTAACACCGCAATTGTCTCTCCCGTATATTATGTCATGTTCACAACTCTGACCATTATTGCTAGTGTGATAATGTTTAAGgt--atcatgaca-tattcatattcttggattcatttggtgctatatggaaggtcttcttttgttgaaagcttgactttttggttgctttaattttctgtgcag-
|| ||||| ||||||||||| |||||||| |||||  ||||||| |||||||||||| |  |||||||  | || ||||  || ||||| |||||   |  ||||  || |   | || |    |  |       || | | ||     ||| || ||  |||   | || |   | || || |    || || ||  
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcctaccattgtcaaagtttaga-gcaacaatatctgtttttctaagtaggtctgtgaagatgattga----tccgtacacc