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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATTTGGAGACATGCTTCTAAATCACTCCAATGCTTTTTCTCTGCTTCCAAGGTCACCCTTCCGTGACATGGCTGTCATTCTAATGCTCATCCACCAGgtacatacgtactaactgcatgtttcactatccatatatatatctagtattttttcatttttggtgtatacatcacttatattgtaattgaaaattggaaaattgcattgcag

Basic information

species Glycine max
transcript GLYMA04G00640.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ34222 (Selaginella moellendorffii), 5'ss of exon 6
------------------------GGCATTTGGAGACATGCTTCTAAATCACTCCAATGCTTTTTCTCTGCTTCCAAGGTCACCCTTCCGTGACATGGCTGTCATTCTAATGCTCATCCACCAGgtaca-tacgtactaactgcatgtttcactatccatatatatatctagtattttttcattttt--------------------ggtgtatacatcacttatattgtaattgaaaattggaaaattgcattgcag-----
                        ||| || || ||||  ||  | |   | ||||| ||  || |||| ||||| | |    ||||||||||||| || |||||||| ||||||||||| |||| |   |   | ||  |  |  | |   || | | | |   | |      | || |  || ||                       || | |     || | ||     |||    | ||   | ||  || |      
CCCGTCCGCCACGGCAGTCTACTGGGCTTTCGGTGACAATCTCTTGACGAAATCCAACGCGCTTGCTCTTCTTCCCAAGAACGCCTTCCGTGACATCGCCgtcattctcatgctcatccatcaggcaagcttttttctttcctcgagctcttctttacttcttcttcttcttcttcttcttcttcttcccgagaagaaagaaagaggaaagtttgccaagtttttctttcttctgattcctcgattctcgcgatggaaaacag