1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTTCCGGTGGCTGCTGTTGTGATCATGGCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatcatatataacattttatttattaatcttttatacttgataatgcaagtattttttttgtccatctgagtcatgatctatttatttttacag
species | Glycine max |
transcript | GLYMA04G00200.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCATGTAATCGTGCTGATTACCTGGAGAGGACTATTAATTCTGTATTGAA ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGEST: gi|192297484|gb|FG989519.1|FG989519
genomic: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
EST: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAA ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGEST: gi|298181686|gb|HO025861.1|HO025861
genomic: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
EST: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAA ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGGATGGEST: gi|207696709|gb|GD676984.1|GD676984
genomic: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGGATGG
EST: CATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTAATTAAA ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGEST: gi|298173640|gb|HO016976.1|HO016976
genomic: CATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGT-ATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
EST: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAA ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGEST: gi|193308761|gb|FK273595.1|FK273595
genomic: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
EST: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAA ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGEST: gi|298195373|gb|HO039204.1|HO039204
genomic: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
EST: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTGTTAAA ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
genomic: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCGGTGGCTGCTGTTGTGATCATGGCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatcatatataacattttatttattaatcttttatacttgataatgcaagtattttttttgtccatctgagtcatgatctatttatttttacag
- - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA