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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAAATAGAAAGCCTTGCTAAGAAATACCAGAGCACTCCTCCCCAATTGGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgacaaaatatcttttccttttttagaatatagaaagtgataaaacatctcaacataacaactgatccaaattagtatccttttagggattatga...

Basic information

species Glycine max
transcript GLYMA03G40880.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015079|gb|CX701821.1|CX701821
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|8404227|gb|BE059861.1|BE059861
EST:     CACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: CACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|58016837|gb|CX703579.1|CX703579
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|213590870|gb|DB975098.1|DB975098
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|22525360|gb|BU084171.1|BU084171
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|10709064|gb|BF008788.1|BF008788
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|7692973|gb|AW761072.1|AW761072
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|209721585|gb|BW671726.1|BW671726
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|21600510|gb|BQ610841.1|BQ610841
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|26048905|gb|CA785358.1|CA785358
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|6666289|gb|AW277748.1|AW277748
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|10254586|gb|BE822352.1|BE822352
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|12688651|gb|BG154987.1|BG154987
EST:     AGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAACAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: AGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|10233104|gb|BE802049.1|BE802049
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|14008706|gb|BG725310.1|BG725310
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|21677800|gb|BQ630151.1|BQ630151
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|254343582|gb|GR857338.1|GR857338
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: gi|20811954|gb|BQ296432.1|BQ296432
EST:     GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG                         GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA