1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatattttagcactgactctgcttcttatattgtagaatttttccatgtgaaaaattaggagataatagcaaattaacaatccatccttcatcttg...
species | Glycine max |
transcript | GLYMA03G40880.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|58016837|gb|CX703579.1|CX703579
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|22525360|gb|BU084171.1|BU084171
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|10709064|gb|BF008788.1|BF008788
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|7692973|gb|AW761072.1|AW761072
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|209721585|gb|BW671726.1|BW671726
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|21600510|gb|BQ610841.1|BQ610841
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|26048905|gb|CA785358.1|CA785358
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|6666289|gb|AW277748.1|AW277748
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|10254586|gb|BE822352.1|BE822352
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|10233104|gb|BE802049.1|BE802049
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|14008706|gb|BG725310.1|BG725310
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|18038680|gb|BM306974.1|BM306974
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCCAGCCGAGAACCTAAACCAGAACAAGAGAEST: gi|254343581|gb|GR857337.1|GR857337
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGGTTCCA-GCAGAGAEST: gi|254343582|gb|GR857338.1|GR857338
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGG-TTCCAAGCAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|20811954|gb|BQ296432.1|BQ296432
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatattttagcactgactctgcttcttatattgtagaatttttccatgtgaaaaattaggagataatagcaaattaacaatccatccttcatcttg
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG