1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAACGAATTGAAAGCCTTGCAAAGATGCATCGGATCACTCCTGCTCAGTTGGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTGgtgagtggaaaaatatttgatactcactagtctgagcagggtacctaattttcaagaatatggttttttatagtaaaatctgaacaaattattatgtaca...
species | Glycine max |
transcript | GLYMA03G40870.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTG GAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGAEST: gi|20812683|gb|BQ297161.1|BQ297161
genomic: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTGgtgagtggaa ... ttatttacagGAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGA
EST: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTG GAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGAEST: gi|20812930|gb|BQ297408.1|BQ297408
genomic: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTGgtgagtggaa ... ttatttacagGAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGA
EST: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTG GAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGAEST: gi|26269337|gb|CA820400.1|CA820400
genomic: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTGgtgagtggaa ... ttatttacagGAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGA
EST: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTG GAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGA
genomic: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTGgtgagtggaa ... ttatttacagGAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACGAATTGAAAGCCTTGCAAAGATGCATCGGATCACTCCTGCTCAGTTGGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTGgtgagtggaaaaatatttgatactcactagtctgagcagggtacctaattttcaagaatatggttttttatagtaaaatctgaacaaattattatgtaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaat