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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAATCATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACCCAAAGGgtgataaattttcactttcattgttattttacattaaacattcattcctttcttcattttccagaattggtatcggtgctcatttagtaataaatacttcaattggtttattacttgttttgtttctag

Basic information

species Glycine max
transcript GLYMA03G40600.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40600.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G096553_T02 (Zea mays), 5'ss of exon 5
CCAAAATCATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACCCAAAGGgtgataaattttcactttcattgttattttacattaaacattcattcctttcttcattttccagaattggtatcggtgctcatttagtaataaatacttcaattggtttattacttgttttgtttctag
|||   |||||||| ||||| ||||||||||| ||||||||||| || || ||   ||     | |  |||  || ||           | |   |||||| |   |       || |  | ||   | | ||  || |  |||||| | |||   |                             
CCACGGTCATTTGGGTTTGCAGGTACAAAGGATAAGCGTGCTGTTACTACACAGCAGgcatgtattcctcaagtttataacagcagagtaattt-cattcagttagtctggagcttccttgtat-aatgttgg--ctaacatagtaacatataacactgaa-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205460|gb|BU964713.1|BU964713
EST:     CATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACCCAAAGG                         GTTACTGTTTACAAGCAGCGAGCAAGTCGGCTAGCTTCCCTTAACAAGCGC
genomic: CATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACCCAAAGGgtgataaatt ... ttgtttctagGTTACTGTTTACAAGCAGCGAGCAAGTCGGCTAGCTTCCCTTAACAAGCGC
EST: gi|208046299|gb|GD848687.1|GD848687
EST:     CATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACCCAAAGG                         GTTACTGTTTACAAGCAGCGAGCAAGTCGGCTAGCTTCCCTTAACAAGCGC
genomic: CATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACCCAAAGGgtgataaatt ... ttgtttctagGTTACTGTTTACAAGCAGCGAGCAAGTCGGCTAGCTTCCCTTAACAAGCGC