Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTACTGTTCATGCTGAAGAGACCGTTGCTTCAAGGAGTGCAGTTGAGATGGTCTTACGTTGTACTCACTTGGATAACAAGGACTTTTTCTCTAAAAGTgtatgcattctattcccacatgttgcctatttaagtgcatgtttgttttttatttgattggccttttggaaaaatctctcatattcgtttttcttgcag

Basic information

species Glycine max
transcript GLYMA03G40220.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 6
AATTACTGTTCATGCTGAAGAGACCGTTGCTTCAAGGAGTGCAGTTGAGATGGTCTTACGTTGTACTCACTTGGATAACAAGGACTTTTTCTCTAAAAGTgtatgcattctattcccacatgttgcctatttaagtg-catgtttgttttttatttgattggccttttggaaaaatctctcatattcgtttttcttgcag
| |  || | || |||||||| || |||||||| |  | ||  | ||||||    || || |||    | ||||||||||||||||| |||||||| |||||| | |     ||      | ||| |  | || ||  ||   || |  ||| ||  |   ||  |||       | ||| || ||| | ||||| |   
ACTCTCTATCCAAGCTGAAGAAACAGTTGCTTCTAAAACTGTCGCTGAGATTAATTTTCGCTGTGTCAATTTGGATAACAAGGACTTGTTCTCTAAGAGTgtacgtacaaacttatgcattcttgtccttctaggtaacaatattatgatttcttgcagaagc--tttaacttgttatcttattttc-tctttctag---

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 5'ss of exon 4
AATTACTGTTCATGCTGAAGAGACCGTTGCTTCAAGGAGTGCAGTTGAGATGGTCTTACGTTGTACTCACTTGGATAACAAGGACTTTTTCTCTAAAAGTgtatgcattctattcccacatgtt-gcctatttaagtgcatgtttgttttttatttgattggccttttggaaaaatctctcatattcgtttttcttgcag----
| | ||||| ||||| || || || ||||||||||||| |||  ||||| |  | || | |||| | |||||||| ||||||||||| ||||||||||||||||| | ||    ||||    || |   ||||   | | | |  ||   ||  ||  |       |   |||  | |||||| ||  ||||| |         
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCATTGTTCACACTTGGAAAACAAGGACTTGTTCTCTAAAAGTgtatgtactcagaacccatgacttagagcattttgttacttataggtgcattgatttgtgtttgggtgttaaatttttctcatctttttttttttctttattag

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 7
AATTACTGTTCATGCTGAAGAGACCGTTGCTTCAAGGAGTGCAGTTGAGATGGTCTTACGTTGTACTCACTTGGATAACAAGGACTTTTTCTCTAAAAGTgtatgcattctattcccacatgttgcctatttaagtgcatgtttgttttttatttgattggccttttggaaaaatctctcatattcgtttttcttg--cag
| | ||||| ||||| || || || ||||||||||||| |||  ||||| |  | || | |||| | |||||||| ||||||||||| ||||||||||||||||| | |     |||  |  | |   ||||   | | | || || | ||  ||  |       |   |||  | || ||| ||  ||||||||    ||
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCATTGTTCACACTTGGACAACAAGGACTTGTTCTCTAAAAGTgtatgtacttagaaccctgacttagagcattttgttacttattggtgtattgatttgtgtttgggtcttaaatttttcacatctttttttttctttattag

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 3
AATTACTGTTCATGCTGAAGAGACCGTTGCTTCAAGGAGTGCAGTTGAGATGGTCTTACGTTGTACTCACTTGGATAACAAGGACTTTTTCTCTAAAAGTgtatgcattctattcccacatgttgcctatttaagtgcatgtttgttttttatttgattggccttttggaaaaatctctcatattcgtttttcttg--cag
| | ||||| ||||| || || || ||||||||||||| |||  ||||| |  | || |||||| | |||||||| ||||||||||| ||||||||||||||||| | |     |||  |  | |   ||||   | | ||| | ||  || | || ||||   ||   |||  | || ||| ||  ||||||||    ||
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCGTTGTTCACACTTGGACAACAAGGACTTGTTCTCTAAAAGTgtatgtacttagaaccctgacttagagcattttgttacttgtgtattgatt-tgtgtttgggtctt---aaatttttcacatctttttttttctttattag

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 6
AATTACTGTTCATGCTGAAGAGACCGTTGCTTCAAGGAGTGCAGTTGAGATGGTCTTACGTTGTACTCACTTGGATAACAAGGACTTTTTCTCTAAAAGTgtatgcattctattcccacatgtt-gcctatttaagtgcatgtttgttttttatttgattggccttttggaaaaatctctcatattcgtttttcttgcag---
| | ||||| ||||| || || || ||||||||||||| |||  ||||| |  | || | |||| | |||||||| ||||||||||| ||||||||||||||||| | |     ||||    || |   ||||   | | | |  ||   ||  ||  |       |   |||  | |||||| ||  |||||  |  |    
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCATTGTTCACACTTGGAAAACAAGGACTTGTTCTCTAAAAGTgtatgtacttcgaacccatgacttagagcattttgttacttataggtgcattgatttgtgtttgggtcttaaatttttctcatcttttttttttctttattag