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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTGgtaatctcagtcttatatgtagctctactattgtgtatgtcgctttacctttgtgagggctcttctgtttgcacatttgtttaagcagtgccttttccttttaatctag

Basic information

species Glycine max
transcript GLYMA03G39760.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g21510.1 (Oryza sativa), 5'ss of exon 6
GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTGgtaatctcagtcttatatgtagctctac-tattgtgtatgtcgctttacctttgtgagggctcttctgtttgcacatttgtttaagcagtgccttttccttttaatctag
|| || || |||||||| ||||| ||||||||||| |||||||| || ||||||||||| || ||||| |   || ||||||  |       | |  | | || |  | || |  | |||     |   |    ||  ||| |    |  ||  ||  ||| | ||  |  ||   |  ||||     
GGAGCGAACATTCTTGTTGATAACAAAGGATGCATTAAACTTGCTGATTTTGGGGCATCTAAGCAAGTGGCAAAGTTGgtaagattgaaa--aaactttgttcaatgtgttattaaggtcaagc-ataatccaaagaactcatgctgtctcatcttccttttatcaaag--ttggacaattaa-----

upper sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g32600.1 (Oryza sativa), 5'ss of exon 6
GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTGgtaatctcagtcttatatgtagctctactattgtgta--tgtcgctttacctttgtgagggctcttctgtttgcacatttgtttaagcagtgccttttccttttaatctag
|| || ||||| ||||| ||||||||||||||||| ||  | |||||||||||||| ||||| ||||| |   || |||| |    ||    |    | | | || | | || |     |   || | || |||   ||||||   |||  ||      | ||         |||  |||  | |    
GGAGCAAATATACTTGTTGATAATAAAGGATGCATTAAGTTAGCAGACTTTGGGGCCTCCAAGCAAGTGGAGAAGTTGgtgagt--agatggactaattgttttaatttcgtttgatcatttgttcaactatgtattggctctaaagttaacat-----tatagatgccaggtttatcttgcatt----

upper sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 6
lower sequence: AC197029.3_FGT003 (Zea mays), 5'ss of exon 6
GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTGgtaatctcagtcttatatgt--------------agctctactattgtgtatgtcgctttac-------ctttgtga--gggctcttctgtttgcacatttgtttaagc----agtgccttttccttttaatctag-----
|| || || |||||||||||||||||||| ||||| |||||||| || ||||||||||| || ||||| |   || ||||||  |||   | |||||               || || |||||  |  | |    ||  |       || |  ||  ||| |  |  |     | | ||  || ||        || || |    |||||| |      
GGTGCAAACATTCTTGTAGATAATAAAGGGTGCATCAAACTTGCTGATTTTGGGGCATCTAAGCAAGTGGCAAAGTTGgtaagatcaaaataatatgcttagtgtgctcttaaggtcaactataatcgagggaagttagcaaacgggctataagactgggttagttggaagagaaacttaatttagttgatgaagcattctatgcttaatccaatgtag

upper sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G098828_T01 (Zea mays), 5'ss of exon 6
GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTGgtaatctcagtcttatatgtagctctactattgtgtatgtcgctttacctttgtgagggctcttctgtttgcacatttgtttaagcagtgccttttccttttaatctag-
|| || || |||||||| ||||||||||| ||||| |||||||| || ||||||||||| || ||||| |   || ||||||  |||   | ||| |         || ||||    |    | |  |  || |  | |     ||| ||| | |||   ||  ||      ||  |   ||   |  
GGTGCAAACATTCTTGTTGATAATAAAGGGTGCATCAAACTTGCTGATTTTGGGGCATCTAAGCAAGTTGCAAAGTTGgtaagatcaaaataatacgc-------ttagtgtgcccttaaggtcaagt--gtaactgatggaa-gttagcaaacttgggcaataagattgggttagtcagaagagaaa

upper sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G09000.1 (Arabidopsis thaliana), 5'ss of exon 6
GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTGgtaa-tctcagtcttatatgtagctctac----tattgtgtatgtcgctttacctttgtgagggctcttctgtttgcacatttgtttaagcagtgccttttccttt---taatctag--------------------------
||||| ||||| ||||| ||||||||||||||||| || ||||| || ||||| |||||||||||||| | |||| |||||| ||  |   | || |||   |||||    |||  || | |  || || |  || || |   |||  | ||| |  | ||| |  || |   | | | | |     | || ||                           
GGGGCTAATATCCTTGTGGATAATAAAGGATGCATTAAGCTTGCTGATTTTGGTGCATCCAAACAAGTAGCTGAGTTGgtaagtcaaaaaataatttgtt-ttctacaaagtatattgcaggaagcatt-ctgttctgtgtattctcttattt-cttagttggtctagtataacatatccttcagagtgatttaatgtgattgacttgatttcatctctag

upper sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0128g00430.t01 (Vitis vinifera), 5'ss of exon 6
GGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTGgtaatctcagtcttatatgtagctctactattgtgtatgtcgctttacctttgtgagggctcttctgtttgcacatttgtttaagcagtgccttt-tccttttaatctag
||||| || || || || ||||||||||||||||| ||||||||||| ||||| || ||||| || || || |||||||||  | |  |||  | |||   | | |  || |  |  |  ||| |  |||||||   |  || || |   |   | || | |      | ||  |     ||      
GGGGCAAACATCCTCGTCGATAATAAAGGATGCATTAAACTTGCAGATTTTGGTGCTTCCAAGCAGGTTGTGGAGCTGgtacacactatctgctctgtgtttattcatttattcagttgacttaatttttgtgattac--ttttgctcaaaatctcgtctgattgagacattggttgccatag-----