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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAACTTGTCCAGGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaaaatcaggaatttagatctacctattcattatcccttctttttttttgtattgggaaagggctggttcttgtttcaataatagcagttttgcaaccttgtaatgtttttgggttgctgattgcag

Basic information

species Glycine max
transcript GLYMA03G39500.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g56000.1 (Oryza sativa), 5'ss of exon 6
CAAAACTTGTCCAGGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaaaatcaggaatttagatctacctattcattatcccttctttttttttgtattgggaaagggctggttcttgtttcaataatagcagttttgcaaccttgtaatgtttttgggttgctgattgcag
|||| |||||||  |||||||||||||| ||||| ||||| || || ||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||      |  ||      | |  ||| |   || ||      | | || || ||   | |   | |   |||    || || |    | ||                                          
CAAAGCTTGTCCGTGATGCCTTTCAGCTTGCAAAGGAGAAATCCCCCTGCATCATTTTTATTGATGAAATTGACGCAATTGGAACAAAGCGTTTTGATAGgtacatttagcattg----tctttatcaatgcatgcaactagacatattattgttcacagtataataaa-ctgtaattttttcctgctacag------------------------------------------

upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g21660.1 (Oryza sativa), 5'ss of exon 6
CAAAACTTGTCCAGGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaaaatcaggaatttagatctacctattcattatcccttctttttttttgtattgggaaa-gggctggttcttgtttcaataatagcagttttgcaaccttgtaatgtttttgggttgctgattgcag
||| |||||| |  |||||||||||||| || ||||||||  | ||||||||||| || || ||||||||||||||||||||||  ||||  || ||||||| |||  || ||          | ||   |  ||||| ||  |    ||||   | | |    |||    || | |||| ||    ||||  |  |   ||||   | |                         
CAAGACTTGTTCGTGATGCCTTTCAGCTTGCTAAAGAGAAAGCCCCATGCATTATTTTCATTGATGAAATTGATGCAATTGGAAGCAAGCACTTTGATAGgtatgacaaacat----------ggtcgttcc-ttcatcatttcccacttttgaatatgtgaacaaatacactaggtctt-ttctgttaatttctttccagcaattgtttgt-----------------------

upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 6
CAAAACTTGTCCAGGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaaaatcaggaatttagatctacctattcattatcccttctttttttttgtattgggaaagggctggtt-cttgtttcaataatagcagttttgcaaccttgtaatgtttttgggttgctgattgcag
| || |||||    ||||| |||||||| || || |||||  | || ||||| || ||||| |||||||||||||| ||||||||||||||||| || ||||         ||   |  |||   ||  ||  |  | | ||  | ||      || ||      |   | | ||  |    ||  |||    || |||  ||| |                             
CTAAGCTTGTTAGAGATGCTTTTCAGCTTGCTAAGGAGAAAGCCCCGTGCATCATCTTTATTGATGAAATTGATGCCATTGGAACAAAGCGTTTTGACAGgtacattttttatttag--tttg--tcatccagtctaatgtctttcctaacaccttttaacctacatcagtttgtgaccaagtttgatag--acattttaacaagc-----------------------------

upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G032505_T02 (Zea mays), 5'ss of exon 6
CAAAACTTGTCCAGGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaaaatcaggaatttagatc-tacctattcattatcccttcttt-----------ttttttgtattgggaaagggctggttcttgtttca--ataatagcagttttgcaaccttg---taatgtttttgggttgctgattgcag-------------------------------------------------
|||| ||||||| |||||| || ||||| || ||||||||  |||| || ||||||||||| ||||| || ||||| ||||| || || ||||| ||||||| ||      || |    || || || | | |  |  |||| |||  |||            | ||| ||    ||||  | |  |      | ||  || | |||| ||||      |     || |||       |   |  |   ||                                                 
CAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttgtatgacattttcagttcatgcatgatt-ttattcctgttttggctgatgatactctttataggatgaaaatgttaatcgcctatacaggatcagagcactttttttgtttcaatttagtgtaaacaaatcattcttattaggaagaagcttatctgatgcatgctccataattttgttctcttggtacag

upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G173849_T01 (Zea mays), 5'ss of exon 2
CAAAACTTGTCCAGGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaaaatcaggaatttagatctacctattcattatcccttcttt--ttttttgtattgggaaagggctggttct-tgtttcaataatagcagttttgcaaccttgtaatgtttttgggttgctgattgcag
|||| ||||||| |||||| || ||||| || ||||||||  |||| || ||||||||||| ||||| || ||||| || || || || ||||| ||||||| ||      || |    ||||| |||  |       ||| ||| ||||   |  |  || |    | | | ||    | ||  ||| |   |  ||                                       
CAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATCGGCACCAAACGTTTTGATAGgtatgccttttatgacatttttagctcttgcatggttctattcctgctttggctgatgatactctttatgagatgaaaatgtgaatcagttgcacaagac-------------------------------------

upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 6
CAAAACTTGTCCAGGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaaaatcaggaatttagatctacctattcat-tatcccttctttttttttg-tattgggaaagggctggttcttgtttcaataatagcagttttgcaaccttgtaatgtttttgggttgctgattgcag
|||| |||||||  ||||||||||| || || ||||||||  |||| |||||||| || ||||||||||| ||||| ||||| |||||||||||||| ||||       |||||     ||  |||   || |||||| |||  || |  ||| |  | |||| |   |   |   |||||   |  | | || |||                                       
CAAAGCTTGTCCGTGATGCCTTTCAACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTGGTACAAAGCGTTTCGACAGgtac-----aaatcttt--ttctgatt--ccaattcatgtatttctgcactttctcagctatttgctcaaatcacattctttggttgagagta-cag---------------------------------------

upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 6
CAAAACTTGTCCAGGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaaaatcaggaatttagatctacctattcattatcccttctttttttttgtattgggaaagggctggttcttgtttcaataatagcagttttgcaaccttgtaatgtttttgggttgctgattgcag
||||||||||||  ||||| || | ||| ||||||||||| || || || |||||||| |||||||| ||||| ||||| || ||||||||||| |||||||          ||    || ||||   |  |  | | |||    | || ||| |  |    |   |  ||||  | ||  ||   | | ||                                          
CAAAACTTGTCCGTGATGCTTTCCTGCTTGCAAAAGAGAAATCCCCTTGTATTATATTCATAGATGAGATTGACGCAATAGGGACAAAGCGTTTTGATAGgtac--------tc---tatctagagtcatgtcataactattttattttctttctgat----gactaatgctgacttttaattggcttacag------------------------------------------

upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 6
CAAAACTTGTCCAGGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaaaatcaggaatttagatctacctattcattatcccttctttttttttgtattgggaaagggctggttcttgtttcaataatagcagttttgcaaccttgtaatgtttttgggttgctgattgcag
| ||||||||||  |||||||||||||| || |||||||| ||||| ||||| || |||||||||||||||||||| || || |||||||| || |||||||      |  || |    |||||  |||| | ||   |     || | |     || ||| |||  |   |  |    ||      |  |||||  |      ||    |  ||| ||  ||  | |||||||
CGAAACTTGTCCGTGATGCCTTTCAGCTTGCTAAAGAGAAATCTCCTTGCATCATTTTTATAGATGAAATTGATGCCATAGGCACAAAGCGGTTTGATAGgta----aaccattattggtttagcactacatctttcatgatatttttatcaaaatggatttggattgaaattatcaaggtgaactcatgagcagcctccttgactatagacttttctgcctt--ttattgcag

upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ37626 (Selaginella moellendorffii), 5'ss of exon 6
CAAAACTTGTCCAGGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaaaatcaggaatttagatctacctattcattatcccttctttttttttgtattgggaaagggctggttcttgtttcaataatagcagttttgcaaccttgtaatgtttttgggttgctgattgcag
|||| || ||    ||||||||||||||||||||||||||| | || ||||| || || || |||||| | || || ||||| || || ||||| ||||||| ||       ||   ||       |  ||  || | || |  |   ||   |                                                                                
CAAAGCTCGTAAGAGATGCCTTTCAGCTGGCAAAAGAGAAGGCGCCCTGCATCATTTTCATCGATGAAGTCGACGCTATTGGGACCAAACGTTTTGATAGgtttgg------tctcaaaacggacacggccggtttactaacagtgacttacatacag----------------------------------------------------------------------------

upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ15061 (Selaginella moellendorffii), 5'ss of exon 6
CAAAACTTGTCCAGGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaaaatcaggaatttagatctacctattcattatcccttctttttttttgtattgggaaagggctggttcttgtttcaataatagcagttttgcaaccttgtaatgtttttgggttgctgattgcag
|||| || ||    ||||||||||||||||||||||||||| | || ||||| || || || |||||| | || || ||||| || || ||||| ||||||| ||     ||     ||   | | |  ||  || | || |  |   ||   |                                                                                
CAAAGCTCGTAAGAGATGCCTTTCAGCTGGCAAAAGAGAAGGCGCCCTGCATCATTTTCATCGATGAAGTCGACGCTATTGGGACCAAACGTTTTGATAGgtttggtctcaa-----aacggacaccggccggtttactaacagtgacttacatacag----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727654|gb|BW663794.1|BW663794
EST:     ATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAG                         TGAAGTAAGTGGAGACAGGGAGGTACAGCGAACAATGTTAGAATTGCTCAA
genomic: ATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaa ... ctgattgcagTGAAGTAAGTGGAGACAGGGAGGTACAGCGAACAATGTTAGAATTGCTCAA
EST: gi|209718166|gb|BW657812.1|BW657812
EST:     ATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAG                         TGAAGTAAGTGGAGACAGGGAGGTACAGCGAACAATGTTAGAATTGCTCAA
genomic: ATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaa ... ctgattgcagTGAAGTAAGTGGAGACAGGGAGGTACAGCGAACAATGTTAGAATTGCTCAA
EST: gi|16281884|gb|BI944719.1|BI944719
EST:     ATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAG                         TGAAGTAAGTGGA
genomic: ATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTCGATAGgtgtgaggaa ... ctgattgcagTGAAGTAAGTGGA