Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGGTCATTGCAAGGCCCTTGCCCCTgtaaggctgttcttcagtccttggacttctattatagcttatggttattgtagagtttcacctgtttgtaactatgtcaaggtctatccttttagagtttatactgtttcttcag

Basic information

species Glycine max
transcript GLYMA03G39130.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040454|gb|BM308748.1|BM308748
EST:     GTGCGGTCATTGCAAGGCCCTTGCCCCT                         ATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATG
genomic: GTGCGGTCATTGCAAGGCCCTTGCCCCTgtaaggctgt ... gtttcttcagATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATG
EST: gi|192297309|gb|FG992403.1|FG992403
EST:     GTGCGGTCATTGCAAGGCCCTTGCCCCT                         ATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATG
genomic: GTGCGGTCATTGCAAGGCCCTTGCCCCTgtaaggctgt ... gtttcttcagATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATG
EST: gi|193704960|gb|FK643960.1|FK643960
EST:     GTGCGGTCATTGCAAGGCCCTTGCCCCT                         ATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGA
genomic: GTGCGGTCATTGCAAGGCCCTTGCCCCTgtaaggctgt ... gtttcttcagATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGA
EST: gi|193461347|gb|FK429292.1|FK429292
EST:     GTGCGGTCATTGCAAGGCCCTTGCCCCT                         ATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATG
genomic: GTGCGGTCATTGCAAGGCCCTTGCCCCTgtaaggctgt ... gtttcttcagATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATG
EST: gi|208145937|gb|GD943576.1|GD943576
EST:     GTGCGGTCATTGCAAGGCCCTTGCCCCT                         ATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATG
genomic: GTGCGGTCATTGCAAGGCCCTTGCCCCTgtaaggctgt ... gtttcttcagATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATG
EST: gi|208331009|gb|GE128558.1|GE128558
EST:     GTGCGGTCATTGCAAGGCCCTTGCCC-T                         ATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATG
genomic: GTGCGGTCATTGCAAGGCCCTTGCCCCTgtaaggctgt ... gtttcttcagATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATG
EST: gi|193357431|gb|FK320137.1|FK320137
EST:     GTGCGGTCATTGCAAGGCCCTTGCCCCT                         ATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATG
genomic: GTGCGGTCATTGCAAGGCCCTTGCCCCTgtaaggctgt ... gtttcttcagATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATG