1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AACTGCTTTAAGATGTGTAGATCCAGATTCTGAGAAAAGGCCCAAGATGGGCCAAGTTGTACGAATGTTGGAGTCAGAGGAATACCCTTTACCAAGAGAGgtttgttttcctcactgtcatgatttaagtcctcaaaatctgttgcttgtttttttccctttgctgtctttggtaatatgtagtaaaaatcatcaaaagc...
species | Glycine max |
transcript | GLYMA03G38800.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCCAAGTTGTACGAATGTTGGAGTCAGAGGAATACCCTTTACCAAGAGAG GACCGAAGACACCGAAGAAGAAATCGAGAGGGTAGTGGAGAAATTGAATCCEST: gi|12772972|gb|BG237899.1|BG237899
genomic: GCCAAGTTGTACGAATGTTGGAGTCAGAGGAATACCCTTTACCAAGAGAGgtttgttttc ... gtatgttcagGACCGAAGACACCGAAGAAGAAATCGAGAGGGTAGTGGAGAAATTGAGTCC
EST: GCCAAGTTGTACGAATGTTGGAGTCAGAGGAATACCCTTTACCAAGAGAG GACCGAAGACACCGAAGAAGAAATCGAGAGGGTAGTGGAGAAATTGAGTCCEST: gi|151411292|gb|EV281103.1|EV281103
genomic: GCCAAGTTGTACGAATGTTGGAGTCAGAGGAATACCCTTTACCAAGAGAGgtttgttttc ... gtatgttcagGACCGAAGACACCGAAGAAGAAATCGAGAGGGTAGTGGAGAAATTGAGTCC
EST: GCCAAGTTGTACGAATGTTGGAGTCAGAGGAATACCCTTTACCAAGAGAG GACCGAAGACACCGAAGAAGAAATCGAGAGGGTAGTGGAGAAATTGAGTCC
genomic: GCCAAGTTGTACGAATGTTGGAGTCAGAGGAATACCCTTTACCAAGAGAGgtttgttttc ... gtatgttcagGACCGAAGACACCGAAGAAGAAATCGAGAGGGTAGTGGAGAAATTGAGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTGCTTTAAGATGTGTAGATCCAGATTCTGAGAAAAGGCCCAAGATGGGCCAAGTTGTACGAATGTTGGAGTCAGAGGAATACCCTTTACCAAGAGAGgtttgttttcctcactgtcatgatttaagtcctcaaaatctgttgcttgtttttttccctttgctgtctttggtaatatgtagtaaaaatcatcaaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA