Sequence
atgc intronic sequence ATGC exonic sequenceCTTGTAAAACTAGTGGGATACTTTAGTAATCGTGACTCATCACAAAATGTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATGgtaatgtaatttttcgaatcatgggttcagcttttagcattgtatggtacatgctttctttgttctattattgacttattgtacttagtatagttttctcaatgtgtgttttatgccttaaactgaaatcggccttgattttgcccggcag
Basic information
species | Glycine max |
transcript | GLYMA03G37910.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G37910.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g14932.3 (Oryza sativa), 5'ss of exon 6
CTTGTAAAACTAGTGGGATACTTTAGTAATCGTGACTCATCACAAAATGTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATGgtaatgt-aatttttcgaatcatgggttcagcttttagcattgtatggtacatgctttctt-----------tgttctattattgacttattg--tacttagtatagttttctcaatgtgtgttttatgccttaaactgaaatcggccttgattttgcccggcag-------------
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CTTGTGAAACTCATTGGTTACTATAGTAACCGTGAGTCATCACAGAACCTACTGTGCTATGAGCTTGTTCCTAATGGAAGCCTAGAGGCTTGGCTTCATGgtatggccaattgagtcaactatttctccttctgaaattgctgcataagttccactcagttgcagttgaatgtggtccttcattgtttaattaattagtggtgatcatgtaatcatgatacaccttgactcttgagtctctgactacttacatttttttcaggtacattgggagctag
upper sequence: GLYMA03G37910.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g14932.1 (Oryza sativa), 5'ss of exon 5
CTTGTAAAACTAGTGGGATACTTTAGTAATCGTGACTCATCACAAAATGTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATGgtaatgt-aatttttcgaatcatgggttcagcttttagcattgtatggtacatgctttctt-----------tgttctattattgacttattg--tacttagtatagttttctcaatgtgtgttttatgccttaaactgaaatcggccttgattttgcccggcag
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CTTGTGAAACTCATTGGTTACTATAGTAACCGTGAGTCATCACAGAACCTACTGTGCTATGAGCTTGTTCCTAATGGAAGCCTAGAGGCTTGGCTTCATGgtatggccaattgagtcaactatttctccttctgaaattgctgcataagttccactcagttgcagttgaatgtggtccttcattgtttaattaattagtggtgatcatgtaatcatgatacaccttgactcttgagtctctgactacttacatttttttcag---
upper sequence: GLYMA03G37910.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G180065_T03 (Zea mays), 5'ss of exon 5
CTTGTAAAACTAGTGGGATACTTTAGTAATCGTGACTCATCACAAAATGTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATGgtaatgtaatttttcgaatcatgggttcagcttttagcattgtatggtacatgctttctttgttctattattgacttattgtacttagtatagttttctcaatgtgtgttttatgccttaaactgaaatcggccttgattttgcccggcag
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CTTGTGAAACTGATTGGTTATTACAGCAGCCGTGAATCATCACAGAACCTTCTTTGTTATGAGCTTGTTCCCAATGGAAGCCTAGAGGCTTGGCTTCATGgta---cgatctattgcatcttctcttaccaaatcctctgtgcataggccccattttatttgcacc----tgaacctactat-ttcagttt-gtttggaccatgtaact------------------------------------------
upper sequence: GLYMA03G37910.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0005g01590.t01 (Vitis vinifera), 5'ss of exon 4
CTTGTAAAACTAGTGGGATACTTTAGTAATCGTGACTCATCACAAAATGTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATGgtaatgtaatttttcgaatcatgggttcagcttttagcattgtatggtacatgctttctttgtt----ctattattgacttattgtacttagtatagttttctcaatgtgtgtttt----atgccttaaac---tgaaatcggccttgattttgcccggcag---
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CTTGTGAAACTTGTGGGTTACTATAGCAATCGTGACTCTTCACAAAATCTCCTTTGTTATGAGCTTGTCCCAAATGGAAGCTTAGAGGCCTGGCTCCATGgtagtttgctttcttgaaccacagatttaa-tgaaatcctcatatatttatctctctttccattgtccctattatggattgtgtatcttggaaaaaaatataaaactctgtacttttgggagattttcaatacatagtattgacaatggtcctgttctgctccag
upper sequence: GLYMA03G37910.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ26603 (Selaginella moellendorffii), 5'ss of exon 3
CTTGTAAAACTAGTGGGATACTTTAGTAATCGTGACTCATCACAAAATGTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATGgtaatgtaatttttcgaatcatgggttcagcttttagcattgtatggtacatgctttctttgttctattattgacttattgtacttagtatagttttctcaatgtgtgttttatgccttaaactgaaatcggccttgattttgcccggcag
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CTCGTGAAGCTTGTCGGGTTTTTCAGTAGCCGGGATTCCTCACAGCATCTTCTCTGCTACGAACTTGTTCCTAATGGAAGTTTGGAGTCGTGGCTTCACGgta---tggattt------cgtgcttgcaagatcta-tattgtgctaacattactctcag-------------------------------------------------------------------------------------------
upper sequence: GLYMA03G37910.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ06380 (Selaginella moellendorffii), 5'ss of exon 3
CTTGTAAAACTAGTGGGATACTTTAGTAATCGTGACTCATCACAAAATGTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATGgtaatgtaatttttcgaatcatgggttcagcttttagcattgtatggtacatgctttctttgttctattattgacttattgtacttagtatagttttctcaatgtgtgttttatgccttaaactgaaatcggccttgattttgcccggcag
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CTCGTGAAACTTGTCGGGTTTTTCAGTAGCCGGGATTCCTCACAGCATCTTCTCTGCTACGAACTTGTTCCTAATGGAAGTTTGGAGTCGTGGCTTCACGgta---tggattt------cgtgcttgcaagatcta-tattgtgctaacattactctcag-------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6566531|gb|AW234174.1|AW234174EST: ACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATG GTCCCTTGGGAATCAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTG
genomic: ACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATGgtaatgtaat ... tgcccggcagGTCCCTTGGGAATCAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGTAAAACTAGTGGGATACTTTAGTAATCGTGACTCATCACAAAATGTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATGgtaatgtaatttttcgaatcatgggttcagcttttagcattgtatggtacatgctttctttgttctattattgacttattgtacttagtatagttttctcaatgtgtgttttatgccttaaactgaaatcggccttgattttgcccggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG