Sequence
atgc intronic sequence ATGC exonic sequenceATAAGGAAAAACAAGTTGATATACCAGGACAAGCCAAGGCTAAAAACAGCATTAGAAATGTTGAGAATCAGCATGAGCCTTGAAGACAGCTTATATAAGgttataaactcgtttgattttatattggatctagttcacaataaaaaattaccacttcttatatatacttattatacctgattttgtttggttcattgactgagttttgagcag
Basic information
species | Glycine max |
transcript | GLYMA03G37290.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G37290.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g21310.1 (Oryza sativa), 5'ss of exon 3
ATAAGGAAAAACAAGTTGATATACCAGGACAAGCCAAGGCTAAAAACAGCATTAGAAATGTTGAGAATCAGCATGAGCCTTGAAGACAGCTTATATAAGgttataaactcgtttgattttatattggatcta-gttcacaataaaaaattaccacttcttatatat---acttattatacctgattttgtttggttcattgactgagttttgagcag---------------------------------------------
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ATCAGGAAGAACAAGCTGATATACCAGGACAAGCCGAGGCTCAAGACCGCACTTGAGATGCTCAGGACCAGCATGTACGTAGAGGACAGCTTGTCCAAGgt-atgtaccc-ctcgtcttcaaatcaactcaatatatgcaccaattagttctcacatctttaggatggcactaagatcacttgagtatgatc--ttggccatgtaagatgacagtaagattatttgaatttgatcctgacaatgtaatgttttttttggcag
upper sequence: GLYMA03G37290.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0005g00510.t01 (Vitis vinifera), 5'ss of exon 7
ATAAGGAAAAACAAGTTGATATACCAGGACAAGCCAAGGCTAAAAACAGCATTAGAAATGTTGAGAATCAGCATGAGCCTTGAAGACAGCTTATATAAGgttataaactcgtttgatttt------------atattggatctagtt-------cacaataaaaaattaccacttcttatatatactt-attatacctgattttgtttg-gttcattgactgagttttgagcag
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ATAAGAAACAATAAGTTGATATACCAAGACAAGCCGAGGCTGAAGACAGCGCTGGAAATGCTCAGAACCAGCATGAGCCTCGAGGACTCATTACATGAGgtcattgcctttcttcttctttggtgtcaacacatacataagataatcaggacagcattacaggaaacaaaagatcctcattgattttggatttccccttatctccccagtgttgattgaggtggtttttggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17519393|gb|BM188435.1|BM188435EST: CATTAGAAATGTTGAGAATCAGCATGAGCCTTGAAGACAGCTTATATAAG GTGACCCTGCCGTTTTTTGTATTGCATGGAGAAGCTGATACAGTGACAGAT
genomic: CATTAGAAATGTTGAGAATCAGCATGAGCCTTGAAGACAGCTTATATAAGgttataaact ... ttttgagcagGTGACCCTGCCGTTTTTTGTATTGCATGGAGAAGCTGATACAGTGACAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAAGGAAAAACAAGTTGATATACCAGGACAAGCCAAGGCTAAAAACAGCATTAGAAATGTTGAGAATCAGCATGAGCCTTGAAGACAGCTTATATAAGgttataaactcgtttgattttatattggatctagttcacaataaaaaattaccacttcttatatatacttattatacctgattttgtttggttcattgactgagttttgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA