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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGATAAGTATGGACGACCAGGATTTAAGACTATACTTAGgtgagagttattgcacatgttgacttgaatcatcaacctgcttggactcctctctgagtaaatttggtggatggcatgttggaatttatttagtataaaactccaggccaatggatttaaatttttattatggtttttgaagttcttatttgaatactattttgttcctgttttctccag

Basic information

species Glycine max
transcript GLYMA03G36910.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G36910.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G358618_T01 (Zea mays), 5'ss of exon 5
TGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGATAAGTATGGACGACCAGGATTTAAGACTATACTTAGgtgagagttattgcacatgttgacttgaatcatcaacctgcttggactcctctctgagtaaatttggtggatggcatgttggaatttatttagtataaaactccaggccaatggatttaaatttttattatggtttttgaagttcttatttgaatactattttgttcctgttttctccag
| || || ||| | |||||||||||||||||| | |||||||| || ||||| || || |||||||| |||||| ||||||| || |||||| || | ||||   ||     |  | |  |  |   |   |||      |||    |||   || | ||  |||  || ||       |  |                                                                                                 
TAAGCGTCTTTTTGTCACCTGACTTGAAACCTCTGATGGGTGGTACATACTTTCCACCGGATGATAATTATGGAAGACCAGGGTTCAAGACTGTATTGAGgtataagcagaagtgcgtagtttcagaagctatc------cttca--tccctactaaata--tttactgcatacttaccttcag------------------------------------------------------------------------------------------------

upper sequence: GLYMA03G36910.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G03200.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGATAAGTATGGACGACCAGGATTTAAGACTATACTTAGgtgagag----ttattgcacatgttgacttgaatcatcaacctgcttggactcctctctgagtaaatttggtggatg-gcatgttggaatttatttagtataaaactccaggccaatggatttaaatttttattatggtttttgaagttcttatttgaatactattttgttcctgttttctccag
||   || || ||||||||||| || || || || ||||||||||| ||||| || ||  |||| || ||||||||||||||||| || ||| | |||| || ||       | || | | | |||     || |||      ||||| | |  |     |  ||||   ||   |  | |      ||     || |   || |||  ||    ||   ||||  || |    ||| ||| |   | | |  ||                              
TGTCGGTATTCCTTTCACCTGATTTAAAGCCGTTGATGGGTGGAACCTACTTTCCTCCAAATGACAATTATGGACGACCAGGATTCAAAACTCTCCTTAAgtaagtaaaccctttttctcttattgtacaaaagcattc-taggcttgtaatggtgcaataaaaaatagagtatgtatgtagaaacaaacgctcttggcg-aagactatag-ttgattcgtttatgttct--ccatgttttctttgggtttggttcag---------------------------

upper sequence: GLYMA03G36910.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0104g01480.t01 (Vitis vinifera), 5'ss of exon 6
TGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGATAAGTATGGACGACCAGGATTTAAGACTATACTTAGgtgagagttattgcacatgttgacttgaatcatcaacctgcttggactcctctctgagtaaat-ttggtggatggcatgttggaatttatttagtataaaactccaggccaatggatttaaatttttattatggtttttgaagttcttatttgaatactattttgttcctgttttctccag
||||||| || ||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |||| || ||||||||| | ||||||||||     || |     |  |||| |||    |   |  |   | |    |   |||  || ||  | ||| |     ||  |||| |         ||||          | || | ||||||| |  | || || |   ||||  | |     || | || || | |          
TGAGTGTCTTCCTTTCACCTGATTTGAAACCTTTGATGGGTGGAACTTACTTTCCCCCGGATGATAAGTATGGAAGACCTGGGTTTAAGACTGTTCTTAGgtgaggacattttcgtccctaaactttaatttctatggttttgaaattttagtgacagtggatattccttgattgttatgtgagatttgt---------aactttgta-----gaatgtcaatttttgtgtttgtcttggccattctcttatac---ctgtattctttcag----------