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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAGgttagttctatcaggactattttttagctttttttcttcttaatccttgcagtctttattctgcataattatgtcttccaatcagaaaccattgcatttgtgtattaatgttagtttccatgcttaacttcttcataggatatttgtgatgctaatcattttctcttgatag

Basic information

species Glycine max
transcript GLYMA03G36650.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G36650.2 (Glycine max), 5'ss of exon 6
lower sequence: AT4G03110.1 (Arabidopsis thaliana), 5'ss of exon 6
CCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAGgttagttctatcaggactattttttagctttttttcttcttaatccttgcagtctttattctgcataattatgtcttccaatcagaaaccattgcatttgtgtattaatgttagtttccatgcttaacttcttcataggatatttgtgatgctaatcattttctcttgatag
 ||     |     ||    |   |||| |     | || |||||||||||||| || |||||| ||||||| || || |||||||||||||||||||| || ||      || ||         ||| |  |      ||| | |  || || |    | ||  |   |   ||||  ||  |  ||   || | |||   | |  ||                                                               
TCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaag------caagaa--------agcctaatactccgttagttcaagctgtataagatttgtctttatcaatcttgtaactaataaaattttcgtttccatttccatag-------------------------------------------------------------

upper sequence: GLYMA03G36650.2 (Glycine max), 5'ss of exon 6
lower sequence: AT4G03110.2 (Arabidopsis thaliana), 5'ss of exon 6
CCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAGgttagttctatcaggactattttttagctttttttcttcttaatccttgcagtctttattctgcataattatgtcttccaatcagaaaccattgcatttgtgtattaatgttagtttccatgcttaacttcttcataggatatttgtgatgctaatcattttctcttgatag
 ||     |     ||    |   |||| |     | || |||||||||||||| || |||||| ||||||| || || |||||||||||||||||||| || ||      || ||         ||| |  |      ||| | |  || || |    | ||  |   |   ||||  ||  |  ||   || | |||   | |  ||   ||                                                          
TCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaag------caagaa--------agcctaatactccgttagttcaagctgtataagatttgtctttatcaatcttgtaactaataaaattttcgtttccatttccatagcag----------------------------------------------------------

upper sequence: GLYMA03G36650.2 (Glycine max), 5'ss of exon 6
lower sequence: AT1G03457.2 (Arabidopsis thaliana), 5'ss of exon 6
---CCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAGgttagttctatcaggactattttttagctttttttcttcttaatccttgcagtcttta----ttctgcataattatgtcttccaat--cagaaaccattgcatttgtgtattaatgttagtttccatgcttaacttcttcataggatatttgtgatgctaatcattttctcttgatag
    |||   ||| ||||  |       ||| | ||  |||| ||  |||||||||| || |||||||||||||||||||| || ||||||||||| ||||| || ||||||         || |  | |  ||     || |  |  | ||  || |  |     | |  | | |  ||| ||    |  ||  |    ||  |||||    ||||   |  | || ||                                                   
AGTTCAA---TCTCATGTCTCCAGACTCGATCCGCAAAACCCCTCCATGTTTGGAGCATTACCTATGAGTTATGTTCCTCCTTACAATGGATATGGCTATCATgtaagttcttgttttctcatctacttggattgaactttttggactcatgaggtttgaaaaagctgtagagattggtgtattttggttgcaagactttttttatttgatccttaaaacttttctctataacag----------------------------------------------

upper sequence: GLYMA03G36650.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0104g01150.t01 (Vitis vinifera), 5'ss of exon 6
CCAAGCTTCTAATGTACCACATACTGATTCT---CAGCACCCATCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAGgttagttctatcaggactattttttagctttttttcttcttaatccttgcagt-ctttattctgcataattatgtcttccaatcagaaaccattgcatttgtgtattaatgttagtttccatgcttaacttcttcataggatatttgtgatgctaatcattttctcttgatag
    || |||||| | |||  | |||||||    ||||| || ||||| ||||||||||||||| |  |||||||||| || || ||||||||||||||||||||||||   ||      |   | |  ||  || ||     ||||    ||| | |||||  |    |  |         ||    |  ||  || |  |   ||| |||                                                                
---GGCATCTAATTTGCCAAGTGCTGATTCAGGACAGCATCCTTCATTATTTGGAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGgttagtctcattgtttattactatatgcagttgtttgatataat----gcaatgctttagccaatgtgttggaa-----catcttgggacggttaccatatcgtaataa----------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344591|gb|GR855462.1|GR855462
EST:     GAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAG                         GCTCCTGTAGGTTATGGGCTGATGCCGTACCGCATGCCACCGATGCAGAGT
genomic: GAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAGgttagttcta ... ctcttgatagGCTCCTGTAGGTTATGGGCTGATGCCGTACCGCATGCCACCGATGCAGAGT
EST: gi|7146634|gb|AW508556.1|AW508556
EST:     GAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAG                         GCTCCTGTAGGTTATGGGCTGATGCCGTACCGCATGCCACCGATGCAGAGT
genomic: GAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAGgttagttcta ... ctcttgatagGCTCCTGTAGGTTATGGGCTGATGCCGTACCGCATGCCACCGATGCAGAGT