Sequence
atgc intronic sequence ATGC exonic sequenceATTTTCCCGTCTATCACACTGCGTTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGgttagatttctcttttaattgcttaatatggtttacaagtctctatttttagtgaactgttaatccatgtggcagtcataagatgtaacttttctgttctttgttgtaatag
Basic information
species | Glycine max |
transcript | GLYMA03G36430.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G36430.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0285g00060.t01 (Vitis vinifera), 5'ss of exon 6
ATTTTCCCGTCTATCACACTGCGTTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGgttagatttctcttttaattgcttaatatggtttacaagtctctatt------tttagtgaactgttaatccat-gtggcagtcataagatgtaac--ttttctgttctttgttgt---aatag
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TTTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttag-cttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatggttttctgttttttactgcctcaatag
upper sequence: GLYMA03G36430.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0352g00020.t01 (Vitis vinifera), 5'ss of exon 6
ATTTTCCCGTCTATCACACTGCGTTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGgttagatttctcttttaattgcttaatatggtttacaagtctctatt------tttagtgaactgttaatccat-gtggcagtcataagatgtaac--ttttctgttctttgttgtaatag
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ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCACGTGGCTGgttag-cttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttactgcctcag
upper sequence: GLYMA03G36430.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0032g00670.t01 (Vitis vinifera), 5'ss of exon 6
ATTTTCCCGTCTATCACACTGCGTTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGgttagatttctcttttaattgcttaatatggtttacaagtctctatt------tttagtgaactgttaatccat-gtggcagtcataagatgtaac--ttttctgttctttgttgtaatag
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ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttagcttcttttccttctaggatg-cattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatagttttctgttttttaccgcctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192326988|gb|FK015185.1|FK015185EST: TAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTG TTACAGGAGTTTGGGGGCTTCTAGCTCTTCACTTGGCTGATGATCCCATTC
genomic: TAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGgttagatttc ... gttgtaatagTTACAGGAGTTTGGGGGCTTCTAGCTCTTCACTTGGCTGATGATCCCATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTTCCCGTCTATCACACTGCGTTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGgttagatttctcttttaattgcttaatatggtttacaagtctctatttttagtgaactgttaatccatgtggcagtcataagatgtaacttttctgttctttgttgtaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC