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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCATGGAGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAGgtagtattgtgatcccagtttgttccaatttccggtctatcttgagctatttgctgttattctaagtcaggcacattgtcttttgatttcag

Basic information

species Glycine max
transcript GLYMA03G35170.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G35170.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g03690.t01 (Vitis vinifera), 5'ss of exon 6
ATCCATGGAGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAGgta-gtattgtgatcccagtttgttccaatttccggtctatcttgagctatttgctgttattctaagtcaggcacattgtcttttgatttcag
||| |||| ||||| ||||| |||||| |||||||||| ||||| ||  |||| |||||| |||||||||| ||||| |||||| || |||||||||||  || |    ||   |||||| | ||  |  | |  || ||| |  | | | || || |            |   | |||    |||||||
ATCTATGGGGACCCAGAAGCAGCAGATGTTGTGTTTACTTCTGGTGCGAATATAGTTGTTGTTGGAATAAATATTACCACCCAAATCAAATTCACAGgtttgtgtcaacattttagtttgcttcatatctctgaatagcttcacttgtgtactcttctgtgtgaaataatatcct-tctcaaaatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12689767|gb|BG156103.1|BG156103
EST:     TATTGGAATAAACATTACAACCCAAGTCCAATTCACAG                         ATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCT
genomic: TATTGGAATAAACATTACAACCCAAGTCCAATTCACAGgtagtattgt ... ttgatttcagATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCT
EST: gi|16347635|gb|BI973230.1|BI973230
EST:     AGATATTGTTGTTATTGGAAT-ATTTTTTCAACCCAAGTCCAATTCACAG                         ATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCT
genomic: AGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAGgtagtattgt ... ttgatttcagATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCT
EST: gi|16105461|gb|BI893201.1|BI893201
EST:     AGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAG                         ATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCT
genomic: AGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAGgtagtattgt ... ttgatttcagATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCT