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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTAGCTGCTGCTAAGGAGAAATTAAATGAGCTTGAGAAGCAGAAAGAAGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttgaaattgtagtatgctgcaatagttctagtgatcacaattttattactattgaaaccctggctaggtcacaaatatgataaactatataatatttttgcag

Basic information

species Glycine max
transcript GLYMA03G34540.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34540.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g04470.t01 (Vitis vinifera), 5'ss of exon 6
GAGTTAGCTGCTGCTAAGGAGAAATTAAATGAGCTTGAGAAGCAGAAAGAAGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttgaaattgtagt-atg----ctgcaatagttctagtgatcacaattttattactattgaaaccctggctaggtcacaaat---atgataaactatataatattt-----ttgcag
||||||||||||||  |||||||||||||||| || ||||  ||||||||||| || || || ||  | ||||| |||| | | ||||| ||| | |||||||  | ||  | ||||  | |||      | || | |     |  | | ||| | | |  |  |  ||   ||   |   ||  | |   ||||| | ||  | ||||| |     | ||||
GAGTTAGCTGCTGCACAGGAGAAATTAAATGAACTGGAGAGACAGAAAGAAGAGATCTTAAAGTTCTACTCCCCTGCATGCTTGCTCCACAGGCTTCAAGgtaataattatagttgtgattatgaaattggtaacaatcaccattgtgataatgtcaatgatgctataataatgaaaataacatgactctgatgatgacctgaacaatatctgtggttcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997616|gb|CF809205.1|CF809205
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACG
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACG
EST: gi|151404521|gb|EV274335.1|EV274335
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|58015690|gb|CX702432.1|CX702432
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|151395409|gb|EV265286.1|EV265286
EST:     AGACATGTTGAAATCGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|213601793|gb|DB982518.1|DB982518
EST:     AGACATGTTGAAATTGAGTTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|254348136|gb|GR851815.1|GR851815
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|10848156|gb|BF071686.1|BF071686
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|22931595|gb|BU548734.1|BU548734
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCNNNTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|27427318|gb|CA938838.1|CA938838
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCAC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCAC
EST: gi|192328158|gb|FK020419.1|FK020419
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC