1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgattttaacagtcactaatcttattggttctgatgcaacgactctgcaatttcaattggctgtagtttcagtagtcagaattgttttataacatctttgcttgtaagctgagttttggttaccttggttcttgccag
species | Glycine max |
transcript | GLYMA03G33270.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|254344581|gb|GR855452.1|GR855452
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|208294148|gb|GE096067.1|GE096067
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: GATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAAATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|207693992|gb|GD675067.1|GD675067
genomic: GATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: GGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATTTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|192331339|gb|FK023808.1|FK023808
genomic: -GTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTEST: gi|151411040|gb|EV280851.1|EV280851
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCT
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAGGCCCAGTTTCTGAAGATAGEST: gi|298199246|gb|HO042609.1|HO042609
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCCGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|26058479|gb|CA801393.1|CA801393
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|208254682|gb|GE051228.1|GE051228
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|254332768|gb|GR846599.1|GR846599
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|120534327|gb|EH262460.1|EH262460
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|120528988|gb|EH257122.1|EH257122
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|192320086|gb|FK014170.1|FK014170
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCACGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|6846249|gb|AW348539.1|AW348539
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTNGAAGAAGCAGGGANNGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|208318139|gb|GE114078.1|GE114078
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCAACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTEST: gi|207839844|gb|GD810037.1|GD810037
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCAACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTEST: gi|192328414|gb|FK020125.1|FK020125
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: CGTCGTGGAATAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACGG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|207765392|gb|GD738171.1|GD738171
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTEST: gi|208022923|gb|GD820933.1|GD820933
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|7146149|gb|AW508071.1|AW508071
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGTCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGATGAGAACGAAGCCCCAGTT-CTGGAGATAEST: gi|208276808|gb|GE073395.1|GE073395
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCC-AGTTTCTGAAGATA
EST: CGTCGTGGAAGAAGCCGGGATCGAAGCTACAGCCGAGACCGCAACTACAG CCGATCGAGATCTCCAGTCAGAAGAGAACGAAGCCCAGTTTEST: gi|120534599|gb|EH262732.1|EH262732
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|151398264|gb|EV268142.1|EV268142
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCGGTTTCTGAAGATAGEST: gi|7692938|gb|AW761037.1|AW761037
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|193626318|gb|FK572682.1|FK572682
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|208233570|gb|GE031451.1|GE031451
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgattttaacagtcactaatcttattggttctgatgcaacgactctgcaatttcaattggctgtagtttcagtagtcagaattgttttataacatctttgcttgtaagctgagttttggttaccttggttcttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC