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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGTGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGgtttgttggttaatagaatttgttttcccttttattttctgttgaatttgtttcaagcaacatgggtgatagtcttccttctttcag

Basic information

species Glycine max
transcript GLYMA03G29010.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g04460.1 (Oryza sativa), 5'ss of exon 5
GGACGTGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGgtttgttggtta--atagaatttgttt--tcccttttattttctgttgaatttgtttcaag-----caacatgggtgatagtcttccttctttcag------
|| |||||||| ||||| ||||| ||||| |||||||||||||||||||| || ||| |||||||| | |||||||| ||  | || ||||||||||| |||  |      |  |||| |||  | |  | || | ||||| |  |      |    || |     |||||  | |  || | || ||   ||| |      
GGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAATTGACTGTCAATATTGTTGCTTTAGTTATCAATTTTGTCTCAGCATGCATCACAGgtgagggcaacattatagtattcatctgataccatgtatttccattaagtggttccccatgatctccaacacag-tactaatgtttctctcttccgtcacag

upper sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g04220.1 (Oryza sativa), 5'ss of exon 5
GGACGTGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGgtttgttggtta--atagaatttgttttcccttttat-tttctgttgaatttgtttc---aagcaacatgg--gtgatagtcttccttctttcag------
|| |||||||| ||||| ||||| ||||| |||||||||||||| ||||| || ||| |||||||| | || ||||| ||  | || ||||||||||  |||  |      |  |||| |||  | |     | | | ||||  || | |   | ||    | |  || |   ||  || | ||      ||| |      
GGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAGTTGACTGTCAATATTGTTGCTTTAGTCATCAATTTTGTCTCAGCATGCATCATAGgtgagggcaacattatagtattcatctgatgctatgtatttccattaagtggttctccatgatctccaagacagtactaatgttttgctcttccgtcacag

upper sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGTGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGgtttgttggttaatagaatttgttttcccttttattttc-tgttgaatttgtttcaagcaacatgggtgatagtcttccttctttcag
|||||||| ||||||||||||||||| || ||||| ||||| ||  | || |||||||| ||||||||| | ||||||||  | ||||| |||||||| |||  |   |  ||   |||       |   ||| || |   |||   |    |  |   | |||   |  | || |   |||      
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaaccaatcaaacaccatctttcttctagcgtttggtcaaatatagtaaccatttcttttggtttcttttccag---

upper sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGTGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGgtttgttggttaatagaatttgttttcccttttattttctgttgaatttgtttca-agcaacatgggtgatagtcttccttcttt-cag
|||||||| || ||||| ||||| || || ||||| ||||| ||  | || |||||||||||||||||| | ||||||||  | ||||| ||||||||||||  ||     |||  ||    |   |  |||  |   |  |    ||||  | | ||   ||    |||| || || |  |||| |||
GGACGTGCTGTGTATATCAACATCCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTTGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACTGgtaagtaa---aatcaaacacatgcacaattt--tcaccaatgatttttgaataacagtttcagtaatgattgttttgcaccttttcag

upper sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 5
GGACGTGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGgtttgttggttaatagaatttgttttccc-ttttattttctgttga-atttgt---ttcaagcaacatg------ggtgatagtcttccttctttcag-------------------------------------
|| |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| ||||| || ||  | || ||  ||||||| |||||||| |||  |||||   || ||  | || ||  | ||| || |  || |   ||||||   ||     || |||          | ||      |  |   |                                      
GGCCGTGCAGTATATATAAACATTCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTGGTTGCGCTTGTAGTAAATTTTGTTTCTGCGTGCATCACAGgtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300347|gb|FG991449.1|FG991449
EST:     AGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTG                         GATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGG
genomic: AGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGgtttgttggt ... cttctttcagGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGG
EST: gi|193472125|gb|FK435210.1|FK435210
EST:     AGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTG                         GATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGG
genomic: AGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGgtttgttggt ... cttctttcagGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGG