1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAAAAGGGCCTGTTTTCGTTACTGCTTTCAGCCCTTTGATGATGATTATCGTAGCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGGgtaagtactcaatactcatattcactcccaatgaacatatcttgttttaggcacaaagaaagaagcttatacgttttagttgattcactcttgtatcata...
species | Glycine max |
transcript | GLYMA03G27760.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTAGCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGG GGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCGGTTCTGTGGGGEST: gi|6455237|gb|AW185920.1|AW185920
genomic: GTAGCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGGgtaagtactc ... gtgatttcagGGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCGGTTCTGTGGGG
EST: GTANCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGG GGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCCGTTCTGTGGGGEST: gi|298199289|gb|HO042652.1|HO042652
genomic: GTAGCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGGgtaagtactc ... gtgatttcagGGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCGGTTCTGTGGGG
EST: GTAGCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGG GGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCGGTTCTGTGGGEST: gi|151396846|gb|EV266719.1|EV266719
genomic: GTAGCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGGgtaagtactc ... gtgatttcagGGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCGGTTCTGTGGG
EST: GTAGCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGG GGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCGGTTCTGTGGGG
genomic: GTAGCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGGgtaagtactc ... gtgatttcagGGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCGGTTCTGTGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAAGGGCCTGTTTTCGTTACTGCTTTCAGCCCTTTGATGATGATTATCGTAGCCATCATGGGTACCTTCATCCTTGCAGAAAAAATATATCTTGGAGGgtaagtactcaatactcatattcactcccaatgaacatatcttgttttaggcacaaagaaagaagcttatacgttttagttgattcactcttgtatcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaagaaa