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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAAGGTTTCCCAGGAAAAGAAGGTGCTGGAAGTGCATGTTGAGAAGGGCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtttatagtatgtatgtcatttgtcttaatactttgtaaggattgcttggaagttgataattttggccttcttaattaaatgcatatgtacttgttgcag

Basic information

species Glycine max
transcript GLYMA03G27030.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27030.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g46390.2 (Oryza sativa), 5'ss of exon 6
AAACAAGGTTTCCCAGGAAAAGAAGGTGCTGGAAGTGCATGTTGAGAAGGGCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtg----------gttta---tagtatgtatgt---------catttgtcttaatactt-tg-taaggattgcttggaagttgataattttggccttcttaattaaatgca-tatgtacttgttgcag------
 | ||| |||   ||||| || |||||||| || || ||| |||||||||| ||||| || || || || ||||| ||  ||||  ||||||||||||||||||||            ||||   ||||||  ||           ||| |   |  || ||| || ||| || |   ||    |  |  | |||     ||| |||    |||| | |||  ||  ||| |      
TAGCAAAGTTATTCAGGAGAAAAAGGTGCTTGAGGTTCATATTGAGAAGGGAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttattttgtccatttatactagtatacatacttgcagccacatattcatccatccttgtgctaatgaatatctgtgcatgcactactttctttatct-aatattttgcactgtgtgtttcatgctgttgcag

upper sequence: GLYMA03G27030.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0021g02090.t01 (Vitis vinifera), 5'ss of exon 6
AAACAAGGTTTCCCAGGAAAAGAAGGTGCTGGAAGTGCATGTTGAGAAGGGCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtttatagtatgtatgtcatttgtcttaatactttgtaaggattgcttggaagttgataattttggccttcttaattaaatg-catatgtacttgttgcag----
||||||||||     |||||||||||| ||||| ||||||||||||||||| |||||||| ||| ||| |||||| ||| ||||| |||| ||| |||| ||||||| ||| ||  || | |||      | | ||| |||      |   |  |     ||| | |   |  ||  | |    | | | | ||   | ||||||       
AAACAAGGTTAGTACGGAAAAGAAGGTACTGGAGGTGCATGTTGAGAAGGGAATGCAGCATGGTGAGAGGATTGTGTTTCAAGGAGAAGCCGATCAAGCGgtaagtgattt-taagatttttgt------tttgaatgcttcaagctgggggtctt----ttgttcaaccttacccacctggcaagacggcgtaaaca-ttgttgtgaatga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193499321|gb|FK458316.1|FK458316
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|26045969|gb|CA783365.1|CA783365
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|21678081|gb|BQ630432.1|BQ630432
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|7588764|gb|AW704552.1|AW704552
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|26058056|gb|CA800970.1|CA800970
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|254323522|gb|GR835968.1|GR835968
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|9819348|gb|BE554861.1|BE554861
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|19345767|gb|BM890647.1|BM890647
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|19452608|gb|BM954018.1|BM954018
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|208179723|gb|GD973642.1|GD973642
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTNA-GGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|58017394|gb|CX704136.1|CX704136
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|15812796|gb|BI785071.1|BI785071
EST:     CAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: CAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|19347132|gb|BM892012.1|BM892012
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|23730894|gb|BU763553.1|BU763553
EST:     CAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: CAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|254318223|gb|GR832391.1|GR832391
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|42722880|gb|CK768779.1|CK768779
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|298177515|gb|HO023648.1|HO023648
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|7639714|gb|AW734031.1|AW734031
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|254313684|gb|GR831313.1|GR831313
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|19346989|gb|BM891869.1|BM891869
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|10843388|gb|BF066687.1|BF066687
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|23727041|gb|BU761535.1|BU761535
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|57575529|gb|CX548504.1|CX548504
EST:     CCATGCAGCAGGGTCAGAAGA-TGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|197665895|gb|FD480387.1|FD480387
EST:     CATGCAGCANGGTCAGAAAGATTG-TTTTGAAGGACAAGCTGATGAAGCT                         CCTTGACACAATCACAGGGAGACATTGTTTTTGTATTGCAAGTAAGGGGAT
genomic: CATGCAGCAGGGTCAG-AAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCC-TGACACAATCACA-GGAGACATTGTTTTTGTATTGCAAGTAA-AGGAT
EST: gi|19452513|gb|BM953923.1|BM953923
EST:     TTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: TTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|193524222|gb|FK480525.1|FK480525
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|27445884|gb|CA953007.1|CA953007
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|254344879|gb|GR851362.1|GR851362
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|254321259|gb|GR827708.1|GR827708
EST:     GAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|24137042|gb|BU927552.1|BU927552
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|192327652|gb|FK020671.1|FK020671
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|16106237|gb|BI893977.1|BI893977
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|19936712|gb|BQ080984.1|BQ080984
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|7589228|gb|AW705006.1|AW705006
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|7588445|gb|AW704302.1|AW704302
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|27808946|gb|CB063368.1|CB063368
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|18692770|gb|BM521618.1|BM521618
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|254347760|gb|GR854009.1|GR854009
EST:     GAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|254317647|gb|GR826631.1|GR826631
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|58016247|gb|CX702989.1|CX702989
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CNTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|19452755|gb|BM954165.1|BM954165
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|17964558|gb|BM271291.1|BM271291
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|6481957|gb|AW201228.1|AW201228
EST:     GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACAAGGTTTCCCAGGAAAAGAAGGTGCTGGAAGTGCATGTTGAGAAGGGCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtttatagtatgtatgtcatttgtcttaatactttgtaaggattgcttggaagttgataattttggccttcttaattaaatgcatatgtacttgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC