1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCATTATTCCCCCTGAACTTGGACCACCAgtgagttccaacatctctagttttgttttatcccctttctctaacttactttgtggtctttccattttatttgatattattattgactgcttagaacttg...
species | Glycine max |
transcript | GLYMA03G26680.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GACCAGGTGGGAAGAGAAGAATCATTATTCCCCCTGAACTTGGACCACCA GTAGGACCTTCAACCTTTTTCAGCTCANAACAGTTTGAAGTTTTTGATGTTEST: gi|151393177|gb|EV263052.1|EV263052
genomic: GACCAGGTGGGAAGAGAAGAATCATTATTCCCCCTGAACTTGGACCACCAgtgagttcca ... tgtactgcagGTAGGACCTTCAACCTTTTTCAGCTCAAAACAGTTTGAAGTTTTTGATGTT
EST: GACCAGGTGGGAAGAGAAGAATCATTATTCCCCCTGAACTTGGACCACCA GTAGGACCTTCAACCTTTTTCAGCTCAAAACAGTTTGAAGTTTTTGATGTTEST: gi|14011350|gb|BG726272.1|BG726272
genomic: GACCAGGTGGGAAGAGAAGAATCATTATTCCCCCTGAACTTGGACCACCAgtgagttcca ... tgtactgcagGTAGGACCTTCAACCTTTTTCAGCTCAAAACAGTTTGAAGTTTTTGATGTT
EST: GACCAGGTGGGAAGAGAAGAATCATTATTCCCCCTGAACTTGGACCACCA GTAGGACCTTCAACCTTTTTCAGCTCAAAACAGTTTGAAGTTTTTGATGTT
genomic: GACCAGGTGGGAAGAGAAGAATCATTATTCCCCCTGAACTTGGACCACCAgtgagttcca ... tgtactgcagGTAGGACCTTCAACCTTTTTCAGCTCAAAACAGTTTGAAGTTTTTGATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCATTATTCCCCCTGAACTTGGACCACCAgtgagttccaacatctctagttttgttttatcccctttctctaacttactttgtggtctttccattttatttgatattattattgactgcttagaacttg
- - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttc