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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATATTCTTACCGCAAAGTTCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAGgtaagatcacaattttgtattgaatttgtaattaaaaattgatcttactttatttgctggggttctctttgtgacattctgaactatgctttgtgtcatt...

Basic information

species Glycine max
transcript GLYMA03G23870.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G23870.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0151g00860.t01 (Vitis vinifera), 5'ss of exon 6
GCATATTCTTACCGCAAAGTTCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAGgtaagatca-----caattttgtattgaatttgtaattaaaaattgatcttactttatttgctggggttctctttgtgacattctgaactatgctttgtgtcatt
|| || |||||||||||||||||||| |||||||||||| | || || | ||| || ||||| ||| |||||||||||      ||| |||||        |  || |    |   | || |  |     |   |   |  | ||  |    | ||   | ||   | | | |  
GCTTACTCTTACCGCAAAGTTCTTCCTGTACTCTCCAAGAAGTACCATGCCATTGCTTTTGATTGGTTAGgtaagatcgtgcttcaagtttgtgagcccactaaaactgtctaggaagctgaaatccaagggcagatatacccttaggttggtttg---tttgaaatatatta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13480064|gb|BG509407.1|BG509407
EST:     TCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAG                         GATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACAC
genomic: TCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAGgtaagatcac ... ttcatctcagGATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACAC
EST: gi|151407763|gb|EV277578.1|EV277578
EST:     TCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAG                         GATTTGGGCTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACAC
genomic: TCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAGgtaagatcac ... ttcatctcagGATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACAC
EST: gi|23053050|gb|BU577541.1|BU577541
EST:     TCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAG                         GATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACAC
genomic: TCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAGgtaagatcac ... ttcatctcagGATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACAC