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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTTGCTGGTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgttttagaatactaatgaatatccatggttgatttggctttcttattgcattttatatgtagtgtgctaataaattattgtttcaatatgatatg...

Basic information

species Glycine max
transcript GLYMA03G14780.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G14780.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 6
TTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTTGCTGGTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgttttagaatactaatgaatatccatggttgatttggctttcttattgcattttatatgtagtgtgctaata--aattattgtttcaatatgatatg
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TTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTGACGTGgtatctctctattttcacatttcctctcttcaaaaagagtttttgttttgt-gcattttaca-gcatgatagtgatactgataaccattctacttaagaatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254342278|gb|GR853415.1|GR853415
EST:     ATTGGCTCCCCAGTTGATGTG                         GTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
genomic: ATTGGCTCCCCAGTTGATGTGgtaatgtttt ... gtatatgcagGTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
EST: gi|10848284|gb|BF071710.1|BF071710
EST:     GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTG                         GTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
genomic: GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgtttt ... gtatatgcagGTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
EST: gi|19053009|gb|BM731676.1|BM731676
EST:     GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTG                         GTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
genomic: GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgtttt ... gtatatgcagGTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
EST: gi|22930316|gb|BU547463.1|BU547463
EST:     GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTG                         GTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
genomic: GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgtttt ... gtatatgcagGTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
EST: gi|10255376|gb|BE823142.1|BE823142
EST:     CCCCAGTTGATGTG                         GTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
genomic: CCCCAGTTGATGTGgtaatgtttt ... gtatatgcagGTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
EST: gi|209707510|gb|BW664969.1|BW664969
EST:     GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTG                         GTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
genomic: GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgtttt ... gtatatgcagGTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
EST: gi|7588265|gb|AW704064.1|AW704064
EST:     GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTG                         GTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
genomic: GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgtttt ... gtatatgcagGTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
EST: gi|15286162|gb|BI470053.1|BI470053
EST:     GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTG                         GTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
genomic: GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgtttt ... gtatatgcagGTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
EST: gi|213607924|gb|DB983879.1|DB983879
EST:     GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTG                         GTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
genomic: GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgtttt ... gtatatgcagGTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
EST: gi|151396786|gb|EV266659.1|EV266659
EST:     GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTG                         GTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT
genomic: GTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgtttt ... gtatatgcagGTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGT