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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagttttattaatatatttaccgatatgatgcatcttcctatcctttgcttagtaaactaccaatctcttgcag

Basic information

species Glycine max
transcript GLYMA03G07420.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07420.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g06870.t01 (Vitis vinifera), 5'ss of exon 6
GGTAAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaa-------tatagttttattaatatatttaccgatatgat---gcatcttcctatcctttgcttagtaaactaccaatctcttgcag----------------------
  | |||||  ||| |   || ||  | |||||||||||||| ||||| |||||||||||||||||| ||||||| ||    ||  |||| ||||| || ||||        ||   |  || |   | |   ||  ||||||   | |  |  || || ||    |  |   |     ||     |  |                      
ATTGAGTGTGCCCAGTGGTGAAACCCGAGTTGATGATGCAGAATTTGAAGAGAATGAAGTTTATGCAGTTGATATAGTCATCAGCTCTGGTGATGGAAAAgtaagtttggacatgaatgcatgatgttttagcccagtatgattttgtaattgactgtcgttaatcttatggccattgtataatccgtggaaaaaaaaaaaaactattgcag

upper sequence: GLYMA03G07420.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 5
GGTAAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaat-atagtttta---ttaatatatttaccgatatgatgcatct--tcctatcctttgcttagtaaactaccaatctc---ttgcag
  | |||||  ||| |||||| || || ||||| ||||||||||||||||||||||||||||||||| | ||||| ||  |||| || || ||||| |||||||| || | | |    ||||   |  ||    | | ||  | |   || ||   ||||       || | |     ||   ||||||
ACTGAGTGTTCCCAGTCCAGAGACCAGAGTTGAGGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAGgtaattatgggtctgattttaacccaaatattattcttattgaccacatcttactttttgtgctcataatttctggaatcaaattgcag

upper sequence: GLYMA03G07420.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S119_137V6.1 (Physcomitrella patens), 5'ss of exon 5
GGTAAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagttt-tattaatatatttac-cgatatgatgcatcttcctatcctttgcttagtaaactaccaatctcttgcag--------------------
  | ||||     ||| | || ||| | || |||||||| || |||||||| || |||||||| ||||||||||| ||| |||| ||||| || || ||||| | ||  | | | ||  | | | ||| |    ||    |  ||  | | | ||||| | ||       ||| ||||   |                    
TTTGAGTGCTGGTAATGCGGAGACACGCGTAGATGATGCTGAATTTGAGGAAAACGAAGTTTACGCAATTGATATTGTAACAAGCACTGGTGAAGGAAAGgtgaaattttctattttgttctgtatactctgggtgcaagagtttgttgtacattgctgattacgtag--aatgtcttagtgacctgaatcgaggtttttta

upper sequence: GLYMA03G07420.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S80_199V6.1 (Physcomitrella patens), 5'ss of exon 5
GGTAAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagttttattaatatatttaccgatatgatgcatcttcctatcct-ttgcttagtaaactaccaatctcttgcag---------------------
  | || || ||||| ||||| ||  | || |||||||| ||||||||||| || ||||| || ||||| ||||||||  | || ||||| ||||| |||||||| |  | | |  | | | || | |||||| |        | ||| |  || ||  |   | |  |||    |    |                     
TCTGAGCGTGTCCAACCCAGAGACGCGTGTAGATGATGCTGAGTTTGAGGAAAACGAAGTGTACGCAATAGATATCGTGACCAGCACTGGTGATGGAAAGgtaattt--tctaaacattcttttcagcgatatcaacttctaccatatacggttactaggagcattttcaactgttgtttgaacagaatgaggttttgcttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208308619|gb|GE104511.1|GE104511
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208258591|gb|GE056368.1|GE056368
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGGTGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193567991|gb|FK524328.1|FK524328
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208215654|gb|GE015548.1|GE015548
EST:     ATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: ATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193424103|gb|FK391590.1|FK391590
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208276389|gb|GE079037.1|GE079037
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAGGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193632705|gb|FK583325.1|FK583325
EST:     GATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: GATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193636320|gb|FK580801.1|FK580801
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193423938|gb|FK390277.1|FK390277
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193423938|gb|FK390277.1|FK390277
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193639633|gb|FK590074.1|FK590074
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAG
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAG
EST: gi|208196485|gb|GD993156.1|GD993156
EST:     TCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: TCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208071367|gb|GD868880.1|GD868880
EST:     AATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|14009221|gb|BG725825.1|BG725825
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|298187503|gb|HO034652.1|HO034652
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208186117|gb|GD986774.1|GD986774
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208193588|gb|GD991633.1|GD991633
EST:     TTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: TTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193438404|gb|FK400113.1|FK400113
EST:     CTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: CTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193541469|gb|FK495287.1|FK495287
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193589741|gb|FK544657.1|FK544657
EST:     TGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: TGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208203670|gb|GE000217.1|GE000217
EST:     TACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: TACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208300711|gb|GE100630.1|GE100630
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208304022|gb|GE105713.1|GE105713
EST:     TTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: TTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193656848|gb|FK606288.1|FK606288
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193536766|gb|FK491826.1|FK491826
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGA
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGA
EST: gi|193474294|gb|FK441999.1|FK441999
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGA
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGA
EST: gi|208219941|gb|GE019345.1|GE019345
EST:     ATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: ATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208078535|gb|GD876123.1|GD876123
EST:     TTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: TTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|207847082|gb|GD819553.1|GD819553
EST:     AGAATGAAG-TTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|151393031|gb|EV262906.1|EV262906
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193331580|gb|FK293320.1|FK293320
EST:     CAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: CAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208058230|gb|GD859801.1|GD859801
EST:     AGAGTGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|13479974|gb|BG509317.1|BG509317
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208285158|gb|GE086000.1|GE086000
EST:     CAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: CAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|207703390|gb|GD685378.1|GD685378
EST:     AAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|17022777|gb|BM093811.1|BM093811
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208315932|gb|GE114400.1|GE114400
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208062080|gb|GD858842.1|GD858842
EST:     TAGCAAGTACTGGTAGTATTGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGA
genomic: TAGCAAGTACTGG-AG-A-TGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGA
EST: gi|208308455|gb|GE102897.1|GE102897
EST:     GCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: GCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|208337329|gb|GE133409.1|GE133409
EST:     TTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: TTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|298188065|gb|HO032022.1|HO032022
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|193350522|gb|FK317498.1|FK317498
EST:     CAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: CAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: gi|207707572|gb|GD689058.1|GD689058
EST:     AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG                         CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTAAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagttttattaatatatttaccgatatgatgcatcttcctatcctttgcttagtaaactaccaatctcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG