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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAGgtactgcttctgctctttctcataatctttgctgaaattattgaaaagcgctattttaaaaattttctattttcccccatttaatccattttggtcgttcttttctcactataattatgtagtgtttgattactaattggttctttgggtattatgctttag

Basic information

species Glycine max
transcript GLYMA03G04500.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 5'ss of exon 5
TATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAGgta-ctgcttctgctctttctcataatctttgctgaaattattgaaaagcgctattttaaaaattttctattttcccccatttaatccattttggtcgttcttttctcactataattatgtagtgtttgattactaattggttctttgggtattatgctttag
|||||||||||||||||||| ||||||||  |||| || ||||||||| ||  ||| |   |   | ||  || |   || || |    |  |     ||| |  ||  ||    |         |||||  |||||      | |                                                              
TATGCTCGTATTATCCAAAAGCTTGGCTTTGCTGCTAAGTTTAAGgtaactatttcaggcttgattaattttcatctgtgcaaatgcctaccattttcattctgtaagatt---gtacctaaatgtttaactcatttgcactataccag-----------------------------------------------------------

upper sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 6
TATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAGgta-ctgcttctgctctttctcataatctttgctgaaattattgaaaagcgctattttaaaaattttctattttcccccatttaatccattttggtcgttcttttctcactataattatgtagtgtttgattactaattggttctttgggtattatgctttag
|| |||||||||||||| || |||||||| ||||| ||||| |||||| ||  |||     |   | ||  || |   || |  |    |  |     ||| |  || | | |     |     | | | | || | |    |                                                                 
TACGCTCGTATTATCCAGAAGCTTGGCTTTCCTGCTAAATTCAAGgtaactatttcaagcttgcttgattttcatctgtgcatgtgcctaccaaatacattctgtaattgtacctaactgtttaactcattgcactataccag-----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31461676|gb|CD403704.1|CD403704
EST:     TATGCTCGTATTATCCNAAAACTTGGCTTCCCTGCCNAATTTAAG                         GATTTCNAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA
genomic: TATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAGgtactgcttc ... tatgctttagGATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA
EST: gi|27445915|gb|CA953038.1|CA953038
EST:     TATGCCCGTATTATCCAAAAGCTTGGCTTCCCTGCCAAATTTAAG                         GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA
genomic: TATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAGgtactgcttc ... tatgctttagGATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA
EST: gi|254322493|gb|GR837907.1|GR837907
EST:     TATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAG                         GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA
genomic: TATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAGgtactgcttc ... tatgctttagGATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA