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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAATGGCTCTCACTCCATGGCTAGCTGAAGGAGGTCAGCTCCTTGCTTCCCGTTTTGAGTTACACGATGTTCGAAGTTTATTACCTGTGGAAAGTGAGgtaagatcagttactgacagggctttatattaactgcaaaaggctgtgaaatttatagctatagaactaccattgccagtggactgagtgctgtcttttt...

Basic information

species Glycine max
transcript GLYMA03G01600.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01600.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g58620.1 (Oryza sativa), 5'ss of exon 14
TTCAATGGCTCTCACTCCATGGCTAGCTGAAGGAGGTCAGCTCCTTGCTTCCCGTTTTGAGTTACACGATGTTCGAAGTTTATTACCTGTGGAAAGTGAGgtaagatcagtt-------actgacagggctttatattaactgcaaaaggctgtgaaatttatagctatagaactaccattgccagtggactgagtgctgtcttttt
|||||||||||| || |||||| ||||||  || || ||| |  | || ||    ||||||   || |||||  |||||||||||||||||||||||||||||   ||  ||       |  |||    |  | | ||| || |      |  |||  ||| |   | |    | |     | || | |    |     ||      
TTCAATGGCTCTTACACCATGGTTAGCTGCTGGTGGCCAGTTTTTGGCATCAAAATTTGAGCAGCATGATGTGAGAAGTTTATTACCTGTGGAAAGTGAGgtatcttcttttcactctcatagaccaacccatgttttaccttctgttt-cgatgacctttttttttttgctgcaatagaggacatttgcaaaaacttagt------

upper sequence: GLYMA03G01600.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G00630.2 (Arabidopsis thaliana), 5'ss of exon 13
TTCAATGGCTCTCACTCCATGGCTAGCTGAAGGAGGTCAGCTCCTTGCTTCCCGTTTTGAGTTACACGATGTTCGAAGTTTATTACCTGTGGAAAGTGAGgta-------agatcagttactgacagggc-tttatattaactgcaaaaggctgtg--aaatttatagctatagaactaccattg---ccagtggact----gagtgc-tgtcttttt--------------------------------------------
 ||||||||||| ||||| ||| ||||||  || || ||  |  |||| || || ||||||||||| |||||||||||||||||||| || ||||| ||||||       | | || ||    | | | | |||||    | | | |    |  |   ||||||| | | ||| | | |  ||||    || |   ||     ||  | ||  || ||                                            
ATCAATGGCTCTTACTCCTTGGTTAGCTGCTGGCGGCCAATTAATTGCGTCTCGATTTGAGTTACAAGATGTTCGAAGTTTATTACCAGTTGAAAGCGAGgtactccttcacaacactttaaaataagtcatttatcaccattcctagtttcaattgtaaatttaaaacaataaagccatgattgacctcaatatccttccgaagctcatgcattcttggggtaaaaatgactgatcctttactttctgaatttacttgcag

upper sequence: GLYMA03G01600.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 14
TTCAATGGCTCTCACTCCATGGCTAGCTGAAGGAGGTCAGCTCCTTGCTTCCCGTTTTGAGTTACACGATGTTCGAAGTTTATTACCTGTGGAAAGTGAGgtaagatcagttactgacagggctttata--ttaactgcaaaaggctgtgaaatttat-agctatagaactacc-attgccagtgga----ctgagtgctgtcttttt-----------------------------------------------
 ||||||||| |||| || ||| ||||||  || || ||| |  |||| || ||||||||||| || ||||||||||||||||| || || || ||||||||| ||    ||| |||      | || |  ||| ||  |  ||||  |  ||||||| |   || |||| ||   | ||      |    ||   ||  |   |  |                                               
CTCAATGGCTATCACACCCTGGTTAGCTGCTGGTGGCCAGTTAATTGCATCTCGTTTTGAGTTGCATGATGTTCGAAGTTTATTGCCCGTCGAGAGTGAGgtaggaatc-ttaatgattcaaatatagaatttacctctattaggcaat--aatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcag