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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCTAGGCTTTCGAGTTTTGGTCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGgtatgccttataacagtttttgttagttttttccttctggcttatgttcaacactataatattcaattgaaaatctgtatcgcatttaaaaatttacaatcatttatgttttagtagagtggagtgatacatgatttcttatatctcttctttgttttgtag

Basic information

species Glycine max
transcript GLYMA03G01300.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 6
AATCCTAGGCTTTCGAGTTTTGGTCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGgtatgccttataacagtttttgttagttttttccttctggcttatgtt-caacactataatattcaattgaaaatctgtatcgcatttaaaaatttacaatcatttatgttttagtagagtggagtgatacatgatttcttatatctcttctttgttttgtag
|| ||||| |||||  |||| ||||| ||||| || ||| ||||||| |||||||| || || |||||||||||||| |||||||| ||  | || ||||||  |  |  |     || || ||   |      | || | || | |   | |  | |||| ||   ||||   ||||      | |    |||||   |  |  |                                                         
AACCCTAGACTTTCCTGTTTCGGTCTCATGAAGAACAGCCGGGATGGAAAAAGTTACAGTACCAATTTGGCATTTACGCCTCCAGAATACATGAGGACTGgtgggtttcttgt---ttcttctttaatgacctatcctagtttgtttagtagccatttaatgttagtttga---tctgataattactgctgaatttctgaggaact---------------------------------------------------------

upper sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 6
lower sequence: AT1G01740.1 (Arabidopsis thaliana), 5'ss of exon 6
AATCCTAGGCTTTCGAGTTTTGGTCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGgtatgccttata---acagtttttgttagttttttccttctggcttatgttcaacactataatattcaattgaaaatctgtatcgcatttaaaaatttacaatcatttatgttttagtagagtggagtgatacatgatttcttatatctcttctttgttttgtag
||||| || ||||| |  |||||  | ||||| |||||  |||||||||||||||||||||||||| | || |||||||| || ||||||||  ||||||||     | ||    ||  |  | ||  ||  | |  ||       || ||| |||   | | | | || ||    |   ||  |                                                                                
AATCCAAGACTTTCAACATTTGGGTTAATGAAGAATAGTCGGGATGGGAAAAGTTATAGCACAAATCTTGCTTTTACCCCACCTGAGTATCTACGAACTGgtgaaattgatttgcaccctcctcgtaggtcatattatttccaacaat-ttctacaacttgagacttaagtgtgtgttgatacag--------------------------------------------------------------------------------

upper sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 6
AATCCTAGGCTTTCGAGTTTTGGTCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGgtatgccttataacagtttttgttagttttttccttctggcttatgttcaacactataatattcaattgaaaatctgtatcgcatttaaaaatttacaatcatttatgttttagtagagtggagtgatacatgatttcttatatctcttctttgttttgtag
|||||||| || ||  | ||||| || ||||||||||| |||||||| ||||||||||| || ||| |||| ||||| ||||| |||||| | ||||||||||||     || |  || |||  |   ||||  ||     ||||||  |     | | ||||   || ||  |   ||| | || ||     || ||||  |  || |    | | ||||                                         
AATCCTAGACTCTCTTGCTTTGGCCTGATGAAAAATAGTAGGGATGGAAAAAGTTATAGTACGAATCTGGCGTTTACTCCTCCTGAGTATTTGAGAACTGgtatg-----tacctcttattgaaataattttaatt-----ttatgtcaa-----aaagtatttgttttaaggttcctat-gtatata---tcttgcaat--tcaatttgagggaaaagtg-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409998|gb|EV279806.1|EV279806
EST:     AAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTG                         GGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTG
genomic: AAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGgtatgcctta ... tgttttgtagGGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTG