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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGgtgcaattcagcacttgtttgacattgtaaattattgtagctttgctatgagcacgctaattattttgagatgcttctgcattgtttgttattcattcatgcag

Basic information

species Glycine max
transcript GLYMA02G48030.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g04050.1 (Oryza sativa), 5'ss of exon 8
GTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGgtgcaattcagcacttgtttgacattgtaaattattgtagctttgctatgagcacgctaattattttgagatgcttctgcattgtttgttattcattcatgcag
 |||||||| |||||||| |||||| | || || ||||| |||||||||| ||| || ||||| || || |||||||||||||| ||    ||  | |||||        | ||  ||   | ||    ||   || | |  || | |  |   || ||  | |   |  ||    || | ||   |  | ||      |||||
ATGGACTCAGCAGATGAGGGATATGTTAGATGCTAGGAAACGTGGAGACTTTGCGTTTCGTGATAAAGATTTTAAGACAGCCATAGAGTGTTACACACAGgt------tggaac--gtcaaatatcaggaacc-ttctggtgttacaaaaaaatcgttagat-tgaagttatctcactcctttacctcctctttgggt-tgcag

upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 5'ss of exon 8
GTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGgtgcaattcagcacttgtttgacattgt----aaattattgtagctttgctatgagcacgct--aattattttgagatgcttctgcattgtttgttattcattcatgcag-------------------------
 |||||||||||||||||||||||| |||| || ||||| ||||| || | |||||| || |||||  | || |||  |||||| |||   ||  | |||||   |  | | | |  ||   | || |    | |   |    | | |   || | |||  |  |  || ||       | |||||    | |  | ||| ||| || |                          
ATGGACTCAACAGATGAGAGATATGTTGGATGCTAGGAAACGTGGTGATTTTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggctgtattatttcttctttatcatgagaccttcaatgttctaaaattaccacttttcatgtagttcattcatcctctgctcgttatcattttccttcttgaaacatctgcatggttattgtttcacag

upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G127050_T01 (Zea mays), 5'ss of exon 8
GTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGgtgcaattcagcacttgtttgacattgtaaattattgtagctttgctatgagcacgctaattattttgagatgcttctgcattgtttgttattcattcatgcag
 ||||| || |||||||| || |||||||| || ||||| ||||| |||| ||| ||||||||||| || || ||| ||||||| ||   |||  | |||||||   ||  |  ||  || | ||    |   | | | |  ||     ||||  ||||   |    |  |     |||  |    | ||   ||| | |||||
ATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGGAAACGTGGGGACTTTGCTTTCCGTGACAAAGATTTCAAGGCAGCCATAGACTGCTACACGCAGgtgc--ctcgac-tttagttaatatcaggagc-actttggtattctagagagc-tgctagaaacgcagccaactcactgtgtcacctctt---catgc-tgcag

upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G026767_T01 (Zea mays), 5'ss of exon 7
GTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGgtgcaattcagcacttgtttgacattgtaaattattgtagctttgctatgagcacgctaattattttg---agatgcttctgcattgtttgttattcattcatgcag---------------------------------------------------------------------
 ||||| || |||||||| ||||||||||| |||||||| ||||| |||| ||| |||   ||||| || |||||| |||| || |||  |||| | ||||||    |  |  ||| ||   |||   ||  ||||  |   |        || | | |  ||| |     | |||   ||| |  |   |   |   ||  |  |                                                                      
ATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGAAACGTGGCGACTCTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAGgtgggcat--gtgcttcttgttcatgaaaagctatttaaaagtgctcccccgccccccagatatatcactcaaatgtagctgtagagagcggggtaatttggtttattttatttacctacctacaatgggacactccaatgtagctgattcttctttccccgtgtttgttgcacag

upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 8
GTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGgtgcaattcagcacttgtttgacattgtaaattattgtagctttgctatgagcacgctaattattttgagatgcttctgcattgtttgttattcattcatgcag--
 ||||| |||||||||||||||||||| || |||||||||||||| |||| |||||||||||||||||| ||||| || |||||||||   ||||| |||||   |||    |  | ||   || || ||| |||  | ||| ||| |     | | |   ||| |  | | | | |   ||   |  | |       | |  |  
ATGGACCCAACAGATGAGAGATATGCTAGAAGCAAGGAAGCGTGGGGACTTTGCATTCCGTGACAAGGATTTTAAAACTGCCATTGATTGTTATTCTCAGgtatgatttc-tatctcttc--caatggaaagtatgat-gctgtgcaaatgctaaggtg--tatctccataggttacactataagtcataaaaggcaaaaggggta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344189|gb|GR855274.1|GR855274
EST:     ATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAG                         TTTATTGATGTTGGAACGATGATCTCTCCAACTGTTTTTGCAAGGCGCAGT
genomic: ATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGgtgcaattca ... attcatgcagTTTATTGATGTTGGAACGATGATCTCTCCAACTGTTTTTGCAAGGCGCAGT
EST: gi|254344188|gb|GR855273.1|GR855273
EST:     ATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAG                         TTTATTGATGTTGGAACGATGATCTCTCCAACTGTTTTTGCAAGGCGCAGT
genomic: ATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGgtgcaattca ... attcatgcagTTTATTGATGTTGGAACGATGATCTCTCCAACTGTTTTTGCAAGGCGCAGT
EST: gi|13312161|gb|BG405821.1|BG405821
EST:     ATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAG                         TTTATTGATGTTGGAACGATGATCTCTCCAACTGTTTTTGCAAGGCGCAGT
genomic: ATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGgtgcaattca ... attcatgcagTTTATTGATGTTGGAACGATGATCTCTCCAACTGTTTTTGCAAGGCGCAGT
EST: gi|9564377|gb|BE473886.1|BE473886
EST:     ATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAG                         TTTATTGATGTTGGAACGATGATCTCTCCAACTGTTTTTGCAAGGCGCAGT
genomic: ATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGgtgcaattca ... attcatgcagTTTATTGATGTTGGAACGATGATCTCTCCAACTGTTTTTGCAAGGCGCAGT