1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATGTTGAAAGATGGTTTGTGGGATGTCTATAAGGATGTTGGCATGGGAGTCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAGgtattttatgattaatttccgttcagaaaggtttcggcaggaccattgttgtagattttttgttgacgtctctgttttcccctcag
species | Glycine max |
transcript | GLYMA02G47860.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAG GATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAAGAAAGTEST: gi|207834341|gb|GD806242.1|GD806242
genomic: TCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAGgtattttatg ... ttcccctcagGATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAAGAAAGT
EST: TCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAG GATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAAGAAAGTEST: gi|193400135|gb|FK367496.1|FK367496
genomic: TCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAGgtattttatg ... ttcccctcagGATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAAGAAAGT
EST: TCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAG GATAACTATGCAGTTCAGAGTTTTGAACGCGGAAEST: gi|193656394|gb|FK602866.1|FK602866
genomic: TCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAGgtattttatg ... ttcccctcagGATAACTATGCAGTTCAGAGTTTTGAACGCGGAA
EST: TCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAG GATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAAAGAAAGEST: gi|208337788|gb|GE134302.1|GE134302
genomic: TCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAGgtattttatg ... ttcccctcagGATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAA-GAAAG
EST: TCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAG GATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAAGAAAGTEST: gi|208074647|gb|GD871266.1|GD871266
genomic: TCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAGgtattttatg ... ttcccctcagGATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAAGAAAGT
EST: AGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAG GATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAAGAAAGT
genomic: AGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAGgtattttatg ... ttcccctcagGATAACTATGCAGTTCAGAGTTTTGAACGCGGAATTGCTGCCCAAGAAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTTGAAAGATGGTTTGTGGGATGTCTATAAGGATGTTGGCATGGGAGTCTGTGCTGAGCTATGTGCAGATAACCATGCATTAACAAGAGATGACCAGgtattttatgattaatttccgttcagaaaggtttcggcaggaccattgttgtagattttttgttgacgtctctgttttcccctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG