Sequence
atgc intronic sequence ATGC exonic sequenceCGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtaggtactaaagaacttatgaagtttacagattcgagttccaagtatgatattaactgtttttttcctttaataataaag
Basic information
species | Glycine max |
transcript | GLYMA02G46450.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G46450.3 (Glycine max), 5'ss of exon 6
lower sequence: AT5G55230.1 (Arabidopsis thaliana), 5'ss of exon 6
CGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtaggtactaaagaacttatgaagtttacagattcgagttccaagtatga--tattaactgttttt-ttcctttaataataaag---
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TGAGGAAAGAGAGCTTTTTGATCATGTTACCTGTAACATTTCATCTTCAGTCGATGAGGTCACTGTGCCAGGTGCTCTTGCACGTGATTTGATTGAGCAGgtaatttatattgcattgatcaatcttcctatgtcctctcttagaaaccagttactgcttgctaatattcatgtaaaatttgtgaag
upper sequence: GLYMA02G46450.3 (Glycine max), 5'ss of exon 6
lower sequence: AT4G26760.1 (Arabidopsis thaliana), 5'ss of exon 6
CGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtaggtactaaagaacttatgaagtttacagattcgagttccaagta-tgatattaactgtttttttcctttaataataaag
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TGAGGAAAGGGAGCTTTTTGACCATGTTACCTCTAACATTTCAGCTTCAGTTCATGAAGTGACTGCCTCTGGTGCTCTCGCACTTGATCTTATCGAACAGgta--tcgtaaatttgtaatgta-tcaatcaatgtgtatgataagtactgcttttaaaaatcttctg--tgaactcttgaag
upper sequence: GLYMA02G46450.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0090g01230.t01 (Vitis vinifera), 5'ss of exon 5
CGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgta---ggtactaaagaacttatg---aagttta----cagattcga---gttccaagtatgatattaactgtttttttcctttaataataaag---------------
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GGAGGAGCGGAGTTTGTTTGATCATGTTACCTGTAACATATCTGCTTCAGTTGATGAAGTGACCATCCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtatttggcttcagaacagtaatgcttaattttggcttcagaatagtaatgtttaatggataatgctggcagtttattcattttactttgttttccttttgttgctaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192323992|gb|FK018683.1|FK018683EST: TTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAG GTTGAAGTGGAAGTTGAGAGACTTGATCAGCTGAAAGCCAGCAGGATGAAG
genomic: TTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtaggtacta ... aataataaagGCTGAAGTGGAAGTTGAGAGACTTGATCAGCTGAAAGCCAGCAGGATGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtaggtactaaagaacttatgaagtttacagattcgagttccaagtatgatattaactgtttttttcctttaataataaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG