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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaattagttttggcatttaatgctaaatgcataagatgtttctgttgtctacggattgtacaagaacctatttacatttaaaaataatgcttacag

Basic information

species Glycine max
transcript GLYMA02G44980.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44980.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g43790.2 (Oryza sativa), 5'ss of exon 7
GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaattagttttggcatttaatgctaaatgcataagatgtttctgttgtctacggattgtacaagaacctatttacatttaa--aaataatgcttacag
|| ||||| || || || || |||||||||||||| || || ||||| |||||||||||||| |||||||| || || || |||||||| ||||||  || | ||  |||||     |  | ||  |  |||    |   |   |  | |   || ||  ||||    | | |  |   ||   ||||    | |   
GCACTTGATACATTTAATACTGCAATTGTATCTCCAATCTATTATGTAATGTTCACAACACTAACAATACTTGCAAGCGTCATAATGTTCAAGgtaatataagttc-ttttgtttccttgtactgcagccattcatttggtagatgattt---gaatgcccaagttattttctgaaagaaactgaatatccttgatt-

upper sequence: GLYMA02G44980.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G120175_T04 (Zea mays), 5'ss of exon 7
GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaatt--agttttggc------atttaatgctaaatgcataagatgtttctgttgtctacggattgtacaagaacctatttacatttaaaaataatgcttacag------------------------------------------------------------------------------
|| |||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| || |||||||| |||||| | |   ||     ||||||      ||||| |||| | | |||       ||   |     | | |   |       | |    | ||||  | ||  |  |    |                                                                              
GCACTTGACACGTTCAACACGGCAATTGTATCTCCAATATATTATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaatttactccctcatgcaccttttggaccctttcagatattttcatattgttgtatttgtttcatatgcattcctcagctctagtattatttgacaaaaccgtaaactgatgccatgctgtttaaatgtttgtgtag

upper sequence: GLYMA02G44980.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G120175_T01 (Zea mays), 5'ss of exon 1
-------GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaatt--agttttggc------atttaatgctaaatgcataagatgtttctgttgtctacggattgtacaagaacctatttacatttaaaaataatgcttacag------------------------------------------------------------------------------
       || |||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| || |||||||| |||||| | |   ||     ||||||      ||||| |||| | | |||       ||   |     | | |   |       | |    | ||||  | ||  |  |    |                                                                              
GCTGTAGGCACTTGACACGTTCAACACGGCAATTGTATCTCCAATATATTATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaatttactccctcatgcaccttttggaccctttcagatattttcatattgttgtatttgtttcatatgcattcctcagctctagtattatttgacaaaaccgtaaactgatgccatgctgtttaaatgtttgtgtag

upper sequence: GLYMA02G44980.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 7
GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaa--ttagttttggcatttaatgctaaatgcataagatgtttctgttg-tctacggattgtacaagaacctatttacatttaaaaataatgcttacag
|||||||| || |||||||| ||| |||| || || ||||| ||||||||||||||| |||||||||| || || ||||| |||||||| |||||||  ||    |||    |||||| | |||||  ||||      ||||||       |||    || |     ||  ||  | |||||  |  |     |||   
GCTCTTGATACTTTCAACACTGCAGTTGTGTCCCCCATATATTATGTCATGTTCACATCACTTACAATCCTTGCTAGTGTGATAATGTTCAAGgtattgtcttctttatcagtggcatcttatgctggatgc------tgtttcctccaacctataactttttagcaaatatagcttcatttttaggtttgctttatta

upper sequence: GLYMA02G44980.2 (Glycine max), 5'ss of exon 6
lower sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaattagttttggcatttaatgctaaatgcataagatgtttctgttgtctacggattgtacaagaacctatttacatttaaaaataatgcttacag-
|| || ||||| || ||||| |||||||| ||||||||||| || |||||||||||| || | || || || || ||||  || ||||| ||||| |   |      |  | ||| |   | | |    || |   |    |     | | | | || |  ||| |    | |      |  | | || | ||||  
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcc-taccattgtcaaagtttagagcaacaatat-ctgtttttctaagta--ggtctgtgaagatgattgatccgtacacc