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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACTGGTCTTGCTGACCGACCTGGGATGAGATTCACAGTTCCCCAAATTAAGgtattactgttaataccaagtattatttcatatataatagttgttcattgtattgctgtctgagttgtgtttcccttcctaag

Basic information

species Glycine max
transcript GLYMA02G44400.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44400.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0009g01800.t01 (Vitis vinifera), 5'ss of exon 6
ATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACTGGTCTTGCTGACCGACCTGGGATGAGATTCACAGTTCCCCAAATTAAGgtattactgttaataccaagtatta-tttcatata--taatagttgttcattgtattgctgtctgagttgtgtttcccttcctaag------------------
 || ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||  |||| || || || ||||||| ||   |||    ||  |||  ||||| |||  ||||  |  | | |  | |  || |||   ||     ||||   ||                     
GTACAAAGGAGGCATCTACATGGTTTTTGAATACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCTGGGATGAGATTTTCAGTCCCTCAGATAAAGgtatcacaaataacctgaaaaatttctttcagataattaatgatgatgcttgatctctctctctcccttcctcctccccctcttcctcatcctgctgcttccag

upper sequence: GLYMA02G44400.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S3_535V6.2 (Physcomitrella patens), 5'ss of exon 3
ATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACTGGTCTTGCTGACCGACCTGGGATGAGATTCACAGTTCCCCAAATTAAGgtattac-tgttaat--accaagtattatttcat-atataatagt-tgttcattgtattgctgtctgagttgtgtttcccttcctaag------------------------------------------------------------------
 |  ||||||   || || ||||| || || ||||||||||||||| | ||||||||||| || |||||||| ||| | ||| |  |||||||||| |||||| | | |||  ||  |     || |   |  | || || |  | | ||| |  | || |  |||      | | || ||  ||                                                                     
GTTCAAAGGTTCTATTTACATGGTGTTCGAGTACATGGACCATGATCTGACTGGTCTTGCAGATCGACCTGGAATGCGCTTCTCTATTCCCCAAATCAAGgtacttcgtgtagatgaattgcttacttcctggtgatgtatttctcttttcttcatttttccttcttcccgctctctctctctctgttctgtcttttgccttatcatttttttcgactcaatcttgaggtttaatatggtcttctataatgcag

upper sequence: GLYMA02G44400.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S235_102V6.1 (Physcomitrella patens), 5'ss of exon 4
ATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACTGGTCTTGCTGACCGACCTGGGATGAGATTCACAGTTCCCCAAATTAAGgtattactgttaataccaagtattatttcatatataatagttgttcattgtattgctgtctgagttgtgtttcccttcctaag-------------------------------------------
 |  |||||    || || ||||| ||||| ||||||||||||||||| ||||| |||||||| || ||||||||| | ||| |  |||||||||| |||||| |   ||     | ||   | | | | |     | | ||  ||  ||| || ||  || | || | | |||     |                                              
GTTCAAAGGCTCTATTTACATGGTGTTTGAGTACATGGACCATGATTTGACTGGCCTTGCTGATCGGCCTGGGATGCGCTTCTCTATTCCCCAAATCAAGgtact-tcgtgggatcaaaccttcactgcttgagcga-attttctctctgt-ttccttccttacttttctgtcctcgttttgcacagcccagttccaagttttaacatggatcttcttcactgcag