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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGATTGAGAGTCATTGCGGAACTAAGACATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagttgtttgttgaaattgctttagaacacttattactcatctcttgcattttgatgttttttttatcatggcttcttaaaaaataaaccaatcaatg...

Basic information

species Glycine max
transcript GLYMA02G43540.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43540.2 (Glycine max), 5'ss of exon 6
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 6
CCGATTGAGAGTCATTGCGGAACTAAGACATGGGGATATATTTCATTCAGCAAATATAGTGTCAAGgtgagttgtttgttgaaattgctttag------aacacttattactcatctcttgcattttgatgttttttttatcatggcttcttaaaaaataaaccaatcaatg
 ||  | ||||| || || ||| |  | ||||||||||||||||||||||| || || || ||||||||| || | | ||     | | ||        ||||  |  ||   | |    | || |    |  | | | |  || |   |||||   || ||          
TCGTCTAAGAGTTATAGCAGAAATCCGGCATGGGGATATATTTCATTCAGCCAACATTGTATCAAGgtgaattttctattccttgttcgttgatcagataacagatgataggtaccaaaagaatgtctccgaatatatcaaaatagacccttaagtgattaagttt------