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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGATGCAGTCCTTTTAATTGCTGCTGTTTTGCCTGATCTTGACATCAAATACATGATCAAGATATGCAAATTACTGGGATTGACTGCACTTGTTGAGgtacgattggtgctttttttatttgtttcctaaatttgaatgacattcaacttcaacattaacaaaactttttaagcttactgacatctggtgtttaata...

Basic information

species Glycine max
transcript GLYMA02G42680.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42680.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g39270.1 (Oryza sativa), 5'ss of exon 6
TGCAGATGCAGTCCTTTTAATTGCTGCTGTTTTGCCTGATCTTGACATCAAATACATGATCAAGATATGCAAATTACTGGGATTGACTGCACTTGTTGAGgtacgattggtgctttttttatttgtttcctaaatttgaatgacattcaacttcaacattaacaaaacttttta---agcttactgacatc-tggtgtttaata---------------------------------------------------------------------------------
 |||||||| || ||| | ||||||||||| || ||||||||||| ||||| || ||| | || ||||||||| |||| ||  || ||||  | ||||||||  | |  ||   ||| | || |||||   |  |   |   || | |||||     ||        ||||  |   |   ||||    |       |  |||                                                                                  
AGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGgttagctgagt-tatttgtgatatgttttacatgtcaaagc-acttccaactctcttatgttagctgctttggagtcattctactagtgttgcaacttccaattcattttcttcttccaagtaaatcaaatgcaacctcaatattcaaattttgatttaataaacaagctaaatgtgttctgaag

upper sequence: GLYMA02G42680.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0057g01240.t01 (Vitis vinifera), 5'ss of exon 6
TGCAGATGCAGTCCTTTTAATTGCTGCTGTTTTGCCTGATCTTGACATCAAATACATGATCAAGATATGCAAATTACTGGGATTGACTGCACTTGTTGAGgtacgattggtgctttt--tttatttgtttcctaaatttgaatgacattcaacttcaacattaac-aaaactttttaagcttactgacatctggt-gtttaata
 ||||||||| | ||| |||||||||||||||| |||||||||||||||| ||||||||  ||||| |||||  | || || ||| | ||||||||||||||| || || | ||| |   ||| |||||   |  ||   |||||  |  ||   |  ||  |||  ||| | | | |  | |   | || || |   ||||| 
GGCAGATGCAATTCTTCTAATTGCTGCTGTTTTACCTGATCTTGACATCAGATACATGACTAAGATTTGCAAGATGCTTGGGTTGGCAGCACTTGTTGAGgtatgaatgctacttctgtcttagttgttatttccat---aatga-gtctaatgactgcagaaactgaaaatgtatgaaatgaaacatatttgtttagttaatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209704987|gb|BW653277.1|BW653277
EST:     AATACATGATCAAGATATGCAAATTACTGGGATTGACTGCACTTGTTGAG                         GTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATTGAGGGGATTGAA
genomic: AATACATGATCAAGATATGCAAATTACTGGGATTGACTGCACTTGTTGAGgtacgattgg ... ttgttcacagGTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATTGAGGGGATTGAA
EST: gi|209729118|gb|BW660015.1|BW660015
EST:     AATACATGATCAAGATATGCAAATTACTGGGATTGACTGCACTTGTTGAG                         GTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATTGAGGGGATTGAA
genomic: AATACATGATCAAGATATGCAAATTACTGGGATTGACTGCACTTGTTGAGgtacgattgg ... ttgttcacagGTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATTGAGGGGATTGAA
EST: gi|209717560|gb|BW671482.1|BW671482
EST:     GCAAATTACTGGGATTGACTGCACTTG-TGAGG                         GTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATTGAGGGGATTGA
genomic: GCAAATTACTGGGATTGACTGCACTTGTTGA-Ggtacgattgg ... ttgttcacagGTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATTGAGGGGATTGA