1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTCGAGGAAACATGGGTTCAGAGGGACAGACTTTTAGAATTCCTGGAAGTTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGgtacatacgtgtcagtctattcagtaactcaactggactgccttcattttagttactttgaagaacctaaaatgaaaatatccatatgctttgtttataa...
species | Glycine max |
transcript | GLYMA02G41810.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAG ATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAGEST: gi|298165190|gb|HO011239.1|HO011239
genomic: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGgtacatacgt ... gagctgacagATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAG
EST: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAG ATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAGEST: gi|208261104|gb|GE060350.1|GE060350
genomic: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGgtacatacgt ... gagctgacagATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAG
EST: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAG ATGCTGGAGCCTTGCTTACTTTTGGTTGGG-ACTTTATGGACAGEST: gi|208099247|gb|GD898762.1|GD898762
genomic: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGgtacatacgt ... gagctgacagATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAG
EST: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAG ATGCTGGAGCCTTG
genomic: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGgtacatacgt ... gagctgacagATGCTGGAGCCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGAGGAAACATGGGTTCAGAGGGACAGACTTTTAGAATTCCTGGAAGTTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGgtacatacgtgtcagtctattcagtaactcaactggactgccttcattttagttactttgaagaacctaaaatgaaaatatccatatgctttgtttataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaaa