1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAGgtttgttgttttttagtactcttctgctatactgctacagtgacctctcaattgaaaatgtcgatgggaaacttattttatgttgattatgtccttatca...
species | Glycine max |
transcript | GLYMA02G40310.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAG CTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCTEST: gi|254337821|gb|GR849560.1|GR849560
genomic: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAGgtttgttgtt ... ttccgtgcagCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCT
EST: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAG CTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCTEST: gi|208244387|gb|GE042572.1|GE042572
genomic: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAGgtttgttgtt ... ttccgtgcagCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCT
EST: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAG CTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGEST: gi|58022083|gb|CX708824.1|CX708824
genomic: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAGgtttgttgtt ... ttccgtgcagCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAG
EST: AGGCTCGCTATCCTGGGGAAGGGAGTGATCGTGATTATGAATATGAGGAG CTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCTEST: gi|8827357|gb|BE211087.1|BE211087
genomic: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAGgtttgttgtt ... ttccgtgcagCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCT
EST: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAG CTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCTEST: gi|208314970|gb|GE112262.1|GE112262
genomic: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAGgtttgttgtt ... ttccgtgcagCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCT
EST: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAG CTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGEST: gi|58020605|gb|CX707347.1|CX707347
genomic: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAGgtttgttgtt ... ttccgtgcagCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAG
EST: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAG CTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCTEST: gi|254337820|gb|GR849559.1|GR849559
genomic: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAGgtttgttgtt ... ttccgtgcagCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCT
EST: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAG CTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCTEST: gi|16347705|gb|BI973300.1|BI973300
genomic: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAGgtttgttgtt ... ttccgtgcagCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCT
EST: NNGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAG CTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCT
genomic: AGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAGgtttgttgtt ... ttccgtgcagCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCACCCTGAAGATGATGAAGGAGAAGTGGTTGCTCCCGAGGCTCGCTATCCTTGGGAAGGGAGTGATCGTGATTATGAATATGAGGAGgtttgttgttttttagtactcttctgctatactgctacagtgacctctcaattgaaaatgtcgatgggaaacttattttatgttgattatgtccttatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG