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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGgtatacttcaaatcattgagcttaacatatcatgaaagtaaggttgctggatgtcttgtcattcagtttgttcagaacatgctggagtttccatgggctt...

Basic information

species Glycine max
transcript GLYMA02G36560.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G36560.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0037g00230.t01 (Vitis vinifera), 5'ss of exon 7
GGGGCTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGgtatacttcaaatcattgagctta-acatatcatgaaagtaaggttgctggatgtcttgtcattcagtttgttcagaacatgctggagtttccatgggctt
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GGGGCTTCAAACCAGCATCTATCCTGGAGAAGTAATATTCTCTATAGCTCTTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAGgtaaatgaagacctgttttgctttcattttttatttttttatgcatggataatctatagagtttttttataatcaatatttatttcctttattgggaact-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407617|gb|EV277432.1|EV277432
EST:     TAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAG                         ACATATCTTCAATCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGG
genomic: TAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGgtatacttca ... atgattacagACATATCTTCAATCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGG
EST: gi|308098814|gb|HO760655.1|HO760655
EST:     AGCTATAAGTGGCCTCAT-CTTTTTGGCCCTTCTGATTGGCAACATGCAG                         ACATATCTTCAATCTCTCA-CATTAGGCTTGAGGAAATGAGAGTCAAAAGG
genomic: AGCTATAAGTGGCCTCATCCTTTTT-GCCCTTCTGATTGGCAACATGCAGgtatacttca ... atgattacagACATATCTTCAATCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGG
EST: gi|193315843|gb|FK280999.1|FK280999
EST:     TAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAG                         ACATATCTTCAATCTCTCACTATTAGGCTTGAGGAAATGAGAGTCAAAAGG
genomic: TAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGgtatacttca ... atgattacagACATATCTTCAATCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGG