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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGTCCCTGTTAATCCAACATTTTTGCCCAGGGTAATgtttcttctttgttagagttgcctattacatttaaaagatgattgactagagtagctgataatgcatctctttggtctgacctatctaatggtgctatatttctcag

Basic information

species Glycine max
transcript GLYMA02G35640.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35640.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
-----TGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGTCCCTGTTAATCCAACATTTTTGCCCAGGGTAA--Tgtttcttctttgttag---agttgccta--ttacatt--taaaagatgattgactagagtagctgataatgcatct----ctttggtctgac--ctatctaatggtgctatatttctcag
     | ||  |||| |||||| ||||||||||||| ||  | || ||||| || ||||||||||| ||||  |||||||| ||||||||| ||||||||||||  ||  ||| |    ||     | |||| ||  || ||||  |||    |  || | |  | |   ||  ||| | | |    ||   |||| |   ||  |      |  | |      |||
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag

upper sequence: GLYMA02G35640.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 6
-----TGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGTCCCTGTTAATCCAACATTTTTGCCCAGGGTAAT-
     |||   || | ||||| |||||||| ||||| ||  ||||||||||||||||||||||||| ||||  |||||||| |||||||||||||| ||||| |  || | || |||||  |      || |||  |||    |||  | | | |    |  |  ||| |   | | |       ||  ||    |   || |           
TGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtatattttttgt--ggccaatcttttatctttgtttgatcttatcattcatatgac--atatttactttttagaactggatataggctacaatgatg----------