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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTGAGGTCATTTGGTGCACCAGCAGTTATTATTTCTATGGCAATTCAAGGAGTTTTTCGTGGAATCAAAGATACAAAAACTCCTTTATATGCTACAGgtacatcatgcatgtctttacattgtatcagtatctctatccagttcattatgatgatagtagatcagtgttaattggtagttaattatgatgcttgtgg...

Basic information

species Glycine max
transcript GLYMA02G31370.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G31370.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g08200.t01 (Vitis vinifera), 5'ss of exon 6
ACATTGAGGTCATTTGGTGCACCAGCAGTTATTATTTCTATGGCAATTCAAGGAGTTTTTCGTGGAATCAAAGATACAAAAACTCCTTTATATGCTACAGgtacatcatgcatgtct-ttacattgtatcagtatctctatccagttcattatgatgatagtagatcagtgttaattggtagttaattatgatgcttgtgg
|||||||||||| |||| || || || ||| || | ||| |||| || ||||| || ||||| ||| | |||||||||||||||||| ||||||||||  ||   |   || |   | |  ||  ||||   ||||  |  |   |    ||   |   | |      | | | ||||  |  ||   ||  |  ||    
ACATTGAGGTCACTTGGAGCTCCTGCTGTTCTTCTCTCTTTGGCCATGCAAGGGGTGTTTCGAGGATTTAAAGATACAAAAACTCCTCTATATGCTACCAgtcagtggagctttcttgtcccaaagtattt-tatcagttgcatttctgctacacttgcatttccctcgggatgattgtgacatataaatcttcttttcct

upper sequence: GLYMA02G31370.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ17255 (Selaginella moellendorffii), 5'ss of exon 4
ACATTGAGGTCATTTGGTGCACCAGCAGTTATTATTTCTATGGCAATTCAAGGAGTTTTTCGTGGAATCAAAGATACAAAAACTCCTTTATATGCTACAGgtacatcatgcatgtctttacattgtatcagtatctctatccagttcattatgatgatagtagatcagtgttaattggtagttaattatgatgcttgtgg
 || |  || |  | || || || |||||| || ||||| | || |  |||||||| ||||||||  | ||||| |||||||||||| | ||||||||||||| || |    |||  || | || | ||  |  ||||  || ||   || |||||||||                                        
TCAATTCGGGCTCTGGGAGCTCCTGCAGTTGTTGTTTCTCTAGCTACGCAAGGAGTGTTTCGTGGCTTTAAAGACACAAAAACTCCTCTGTATGCTACAGgtaaattaattttgttctttctttctttcgtt--ctctgacctgt--gttttgatgatag----------------------------------------