Sequence
atgc intronic sequence ATGC exonic sequenceGTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGTTGGGCCAAGGATGAACGCACATTAAAGgtatgggttactcaaatataattcatatatgtgctgtatgctcataagagattcgtatttctacttgttatcttattgtcttctcattcattcaccgaga...
Basic information
species | Glycine max |
transcript | GLYMA02G31320.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G31320.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G878139_T02 (Zea mays), 5'ss of exon 4
GTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGTTGGGCCAAGGATGAACGCACATTAAAGgtatgggttactcaaatataattcatatatgtgctgtatgctcataagagattcgtatttctac-ttgttatcttattgtcttctcattcattcaccgaga
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GTCATTGGCTGGTCAATGTGGTTTGCAGAGTACCTCTTTTTGGAGAGGAGCTGGGCCAAGGATGAAAAGACACTAAAGgta------actc---tccaccttacctatattgggcatcct----agttttcctttttttcacatagtgagctttttaattttgcatacag---------
upper sequence: GLYMA02G31320.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G57650.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGTTGGGCCAAGGATGAACGCACATTAAAGgtatgggtt------actcaaatataattcatatatgtgctgtatgctcataagagattcgtatttctacttgttatcttattgtcttctcattcattcaccgaga--------------------------------------------------------
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GTCATAGGCTGGTCAATGTGGTTCTCGGAGTATCTCTTTCTGGAAAGAAATTGGGCCAAGGATGAAAGCACTCTAAAGgtatgggtttatagtatccttgtgcaactcatttagtttttgct--cctgtgtaaaatgcttattagcacgtgcagctacctcgttcatgaggggattagcctaaaaatgcagaatcttcatttccagaccatgagttatgtgtgtttgtctaaatttacag
upper sequence: GLYMA02G31320.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g08110.t01 (Vitis vinifera), 5'ss of exon 6
GTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGTTGGGCCAAGGATGAACGCACATTAAAGgtatgggttactcaaatataattcatatatgtgctgtatgctcataag-agattcgtatttctacttgttatcttattg----tcttctcattcattcaccgaga------------------------
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GTGATAGGTTGGTCAATGTGGTTTTCTGAGTATTTATTTCTGGAAAGAAACTGGGCCAAGGATGAAAGCATAATAAAGgtactgctgcagcaaaaattttctgaatatgtactgtgtatgtgtgtgtacatatatgcttgcacaaatccttatattcgagctgttcacatcgatctttttcaattttttatgacattgtatctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19348278|gb|BM892810.1|BM892810EST: AATATCTTTTCCTGGAGAGAAGTTGGGCCAAGGATGAACGCACATTAAAG TCAGGCCTACAGCAACTGAGGGATTTCCCTCTTCCCTTTTGGTTGGCTCTC
genomic: AATATCTTTTCCTGGAGAGAAGTTGGGCCAAGGATGAACGCACATTAAAGgtatgggtta ... gcatgtgcagTCAGGCCTACAGCAACTGAGGGATTTCCCTCTTCCCTTTTGGTTGGCTCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGTTGGGCCAAGGATGAACGCACATTAAAGgtatgggttactcaaatataattcatatatgtgctgtatgctcataagagattcgtatttctacttgttatcttattgtcttctcattcattcaccgaga
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG