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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGTCAAGGCAGAAGGAAGAGATGTTTAAAGCTAAAGAATTTTTGGAGACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTAgtaagtactgctattcatctatgatctacccatgaattacatatagaaactgggcttaattaacattttatctctcagaatatacacctctcttggtttt...

Basic information

species Glycine max
transcript GLYMA02G28000.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G28000.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g04730.t01 (Vitis vinifera), 5'ss of exon 6
ACAAGTCAAGGCAGAAGGAAGAGATGTTTAAAGCTAAAGAATTTTTGGAGACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTAgtaagtactgctattcatctatgatctacccatgaattacatatagaaactgggcttaattaacattttatctctcagaat-atacacctctcttggtttt------
||    ||||| ||||| ||||| ||   || ||||||||||| |||||||| ||||| || || ||||| ||||| |||||||||||||| ||||| |||||||||        | | ||   ||   | |   || ||  ||       | |   ||| |  ||  ||  | | | ||| || |||     | ||||        
ACCGCACAAGGAAGAAGAAAGAGTTGCAGAAGGCTAAAGAATTCTTGGAGACATTTAAGTCATCTAGAAACGCTCAGTTCTATGATGGGAAACACAAATAgtaagtagacaataccttttacattcatactaaccataactaattcttttggagtccaatgacaatcataggttttataattattcactgtgttaggttcattaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13240091|gb|BG359400.1|BG359400
EST:     ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTA                         GCTCTGGATTTGACCAAGAAGGGAGTGACCTTCCAAACATGGTATTATTGC
genomic: ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTAgtaagtactg ... ttattttcagGCTCTGGATTTGACCAAGAAGGGAGTGACCTTCCAAACATGGTATTATTGC
EST: gi|13477679|gb|BG507460.1|BG507460
EST:     ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTA                         GCTCTGGATTTGACCAA
genomic: ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTAgtaagtactg ... ttattttcagGCTCTGGATTTGACCAA
EST: gi|51338535|gb|CO982401.1|CO982401
EST:     ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTA                         GCTCTGGATTTGACCAAGAAGGGAGTGACCTTCCAAACATGGTATTATTGC
genomic: ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTAgtaagtactg ... ttattttcagGCTCTGGATTTGACCAAGAAGGGAGTGACCTTCCAAACATGGTATTATTGC
EST: gi|9902510|gb|BE611478.1|BE611478
EST:     ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTA                         GCTCTGGATTTGACCAA
genomic: ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTAgtaagtactg ... ttattttcagGCTCTGGATTTGACCAA