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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAGACGAATAATTGCAGGAAAGTGGGGTTCTAATAATGGGCAAGCCTGCATTTCTCCAGATTATATTATAACAACTAAAGACTATGCTCCCAAGTTGgtaataaattttttcctaagtgttattagaattctaaatttgttggtttgttcagtgtttgtttccttctatttctag

Basic information

species Glycine max
transcript GLYMA02G26390.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G26390.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g02440.t01 (Vitis vinifera), 5'ss of exon 8
AACAAGACGAATAATTGCAGGAAAGTGGGGTTCTAATAATGGGCAAGCCTGCATTTCTCCAGATTATATTATAACAACTAAAGACTATGCTCCCAAGTTGgtaataaattttttcctaagtgttattagaattctaa--atttgttggtttgttcagtgtttgtttccttctatttctag-----
||  || || |||   |  || |||||||     |||||||| |||||||||||| |||| ||||||||| | ||||| ||||||| |||||| ||||||||||    |  |    |   ||  |||||  |  ||   |||  |  |||| ||   | ||  | ||||  || || |       
AATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAAGCCTGCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGgtaa-ggctgctaatatgtatgaaattagtttggtatttattcctctgtttatttcattttcctctcctgttactttttctccag