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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGACCATATTGTGGCACCGCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCGgtatgtatggttattcccttgatttgattatttgtttaattgtctgttttagatttatttaaattttaagttgtaaattacaaatggagtaacttctcag...

Basic information

species Glycine max
transcript GLYMA02G17250.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193434977|gb|FK402921.1|FK402921
EST:     GCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCG                         GTGCACTAGGATCAACATGGACAGCAATCAATCTGGAGTAAGGGACAATAT
genomic: GCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCGgtatgtatgg ... ctggcttcagGTGCACTAGGATCAACATGGACAGCAATCAATCTGGAGTAAGGGACAATAT
EST: gi|193516272|gb|FK472512.1|FK472512
EST:     ACCATATTGTGGCACCGCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCG                         GTGCACTAGGATCAACATGGACAGCAATCAATCTGGAGTAAGGGACAATAT
genomic: ACCATATTGTGGCACCGCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCGgtatgtatgg ... ctggcttcagGTGCACTAGGATCAACATGGACAGCAATCAATCTGGAGTAAGGGACAATAT
EST: gi|208328466|gb|GE132130.1|GE132130
EST:     ACCATATTGTGGCACCGCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCG                         GTGCACTAGGATCAACATGGACAGCAATCAATCTGGAGTAAGGGACAATAT
genomic: ACCATATTGTGGCACCGCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCGgtatgtatgg ... ctggcttcagGTGCACTAGGATCAACATGGACAGCAATCAATCTGGAGTAAGGGACAATAT
EST: gi|193387446|gb|FK352205.1|FK352205
EST:     GCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCG                         GTGCACTAGGATCAACATGGACAGCAATCAATCTGGAGTAAGGGACAATAT
genomic: GCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCGgtatgtatgg ... ctggcttcagGTGCACTAGGATCAACATGGACAGCAATCAATCTGGAGTAAGGGACAATAT
EST: gi|193418270|gb|FK383488.1|FK383488
EST:     ACCATATTGTGGCACCGCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCG                         GTGCACTAGGATCAACATGGACAGCAATCAATCTGGAGTAAGGGACAATAT
genomic: ACCATATTGTGGCACCGCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCGgtatgtatgg ... ctggcttcagGTGCACTAGGATCAACATGGACAGCAATCAATCTGGAGTAAGGGACAATAT
EST: gi|207726617|gb|GD701519.1|GD701519
EST:     GCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCG                         GTGCACTAGGATCAACATGGACAGCAATCAATCTGGAGTAAGGGACAATAT
genomic: GCTTCTTAGCCCCGTTGGACTTCCTTTACGTCCGgtatgtatgg ... ctggcttcagGTGCACTAGGATCAACATGGACAGCAATCAATCTGGAGTAAGGGACAATAT