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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGgtaatgtaattaatttcaagaatatgcctagttactttctcaatagtgccgtattctactgaatttcattataattagcagtgttgcagagtatatatag...

Basic information

species Glycine max
transcript GLYMA02G16860.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16860.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g45350.2 (Oryza sativa), 5'ss of exon 6
ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGgtaatgtaa----ttaatttcaagaatatgcctagt-tactttctcaatagtgccgtattctactgaatttcattataattagcagtg-ttgcagagtatatatag
||||||||||||||||||| |||| |||| ||||||  ||||||||| |||||||||||||||||||||||  |     ||||||        |||||| || |   | | | ||  | |  ||     || | | |   | |  ||     |  ||     ||||  ||||
ATGCTTGGAGTCAAGAGAACTGAAAGGGTTCTTCCAACTGGAACTTCATTGACTGTTGTTGGTGAGgtaattcatagctttaattcgtctgcaatgccttgtgttggtgccctattttcctttacatggctaagtcttgctttcgtttttgattcttatgttgtatgaatag

upper sequence: GLYMA02G16860.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G020574_T07 (Zea mays), 5'ss of exon 6
ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGgtaatgtaattaatttcaa---gaatatgcctagttac-------tttctcaatagtgccgtattctactgaatttcattataattagcagtgttgcagagtatatatag------------------------------------
||||| ||||| ||| ||| |||| |||| ||||||  |||||| || ||||| ||||||||||||||| | |   || | || |   | || |||   ||| |       |||||    |   |  ||||   ||     |  |  |   ||  | | ||  |    ||  | ||                                    
ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttctattatccattggtatgtgctgtgttgcattagtttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacaggccattaaagatgatgttggaactattcgaattcag

upper sequence: GLYMA02G16860.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G873779_T01 (Zea mays), 5'ss of exon 2
----------------------------------ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGgtaatgtaattaatttcaa---gaatatgcctagttac-------tttctcaatagtgccgtattctactgaatttcattataattagcagtgttgcagagtatatatag
                                  ||||| ||||| ||| ||| |||| |||| ||||||  |||||| || ||||| ||||||||||||||| | |   || | || |   | || |||   ||| |       |||||    |   |  ||||   ||     |  |  |   ||  | | ||  |    ||  | ||
AACACAATTAGTGACTAAACAATTATCTCTATAGATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttctattatccattggtatgtgctgtgttgcattagtttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacag

upper sequence: GLYMA02G16860.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G020574_T08 (Zea mays), 5'ss of exon 6
ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGgtaatgtaattaatttcaa---gaatatgcctagttac-------tttctcaatagtgccgtattctactgaatttcattataattagcagtgttgcagagtatatatag
||||| ||||| ||| ||| |||| |||| ||||||  |||||| || ||||| ||||||||||||||| | |   || | || |   | || |||   ||| |       |||||    |   |  ||||   ||     |  |  |   ||  | | ||  |    ||  | ||
ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGgtattatttctattatccattggtatgtgctgtgttgcattagtttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacag

upper sequence: GLYMA02G16860.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G020574_T01 (Zea mays), 5'ss of exon 6
ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGgtaatgtaattaatttcaa---gaatatgcctagttac-------tttctcaatagtgccgtattctactgaatttcattataattagcagtgttgcagagtatatatag------------
||||| ||||| ||| ||| |||| |||| ||||||  |||||| || ||||| ||||||||||||||| | |   || | || |   | || |||   ||| |       |||||    |   |  ||||   ||     |  |  |   ||  | | ||  |    ||  | ||            
ATGCTGGGAGTAAAGCGAACTGAAAGGGTTCTTCCAACTGGAACCTCATTGACAGTTGTTGGTGAGGTATTATTTCTATTATCCATTGgtatgtgctgtgttgcattagtttttcttggcatgtctatatttgtctcttccttttgttctatattattattatatcacatgaacaggccattaaagat

upper sequence: GLYMA02G16860.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0104g00630.t01 (Vitis vinifera), 5'ss of exon 6
ATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGgtaatgtaattaatttcaagaatatgcctagttactttctcaatagtgccgtattctactgaatttcattataattagcagtgttgcagagtatatatag
||||| ||||| ||| ||||||| ||||| ||||||  ||| ||  | |||||||||||||||||||||   |     | || |  ||  || |   |   | | |  ||||      | | |    | |   ||     |||   |  ||     |   | | ||
ATGCTCGGAGTGAAGCGAATTGAGCGGGTTCTTCCAACTGGCACACCTTTGACTGTTGTTGGTGAGgtatgtttcaccactttaccaaattgacagatatttctttgcatagatatacactgtttcaattgctatccactttaagcgcattatgttggtaaaagag