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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATGCAGTGGCACCACTGGTAACTGACATCCCATTATCGTCAGTCGAGgtaattattctacctaacgtatagtcggcacaaatttgtttctctccaattatcaaatttagtatctatcaattcag

Basic information

species Glycine max
transcript GLYMA02G16110.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16110.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0141g00220.t01 (Vitis vinifera), 5'ss of exon 5
----------------------------CTGATGCAGTGGCACCACTGGTAACTGACATCCCATTATCGTCAGTCGAGgtaattattctacctaacgtatagtcggcacaaatttgtttctctccaattatcaaattt--agtatctatcaattcag-------------
                            ||| |||||| |||||||| ||||| ||||| |||||| | |||||||||||||| |        ||  ||||          ||||  ||||| |||  | |  ||||    || ||| ||  ||                
GTCTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaacaacaagaagatatataaacttgccatttaattctccccatgtctttaattgtaggtttctttcttttttctgctttttttaag