Sequence
atgc intronic sequence ATGC exonic sequenceGATGTATATTCTTTTGGAGTTGTGCTTTTGGAACTAATTACTGGACGGAAGCCAGTAGATGCATCTCAACCTTTGGGAGATGAGAGCTTAGTTGAAATGGgtacatatagatgccatgccagtcttgcttttatcactcttttgctagtgtagctatctttttttcctaatctttgtgtttgggaagcctaatattagtg...
Basic information
species | Glycine max |
transcript | GLYMA02G14310.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G14310.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G26150.1 (Arabidopsis thaliana), 5'ss of exon 6
-GATGTATATTCTTTTGGAGTTGTGCTTTTGGAACTAATTACTGGACGGAAGCCAGTAGATGCATCTCAACCTTTGGGAGATGAGAGCTTAGTTGAAATGGgtaca-tatagatgccatgccagtcttgcttttatcactcttttgctagtgtagctatctttttttcctaatctttgtgtttgggaagcctaatattagtg
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AGACGTATTCTCCTTTGGGGTTGTTCTACTGGAGTTAATCACTGGACGTAAGCCTGTGGATGCATCCCAACCTCTGGGAGATGAGAGCCTTGTTGAA-TGGgtatggtataaata-------agcatt--------taaacttttgagaatggaactgtttcttcaatccaatgtttgtgtt--gaatgtttcag-------
upper sequence: GLYMA02G14310.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g02460.t01 (Vitis vinifera), 5'ss of exon 6
-GATGTATATTCTTTTGGAGTTGTGCTTTTGGAACTAATTACTGGACGGAAGCCAGTAGATGCATCTCAACCTTTGGGAGATGAGAGCTTAGTTGAAATGGgtacatatagatgccatgccagtcttgcttttatcactcttttgcta-gtgtagctatctttttttcctaatctttgtgtttgggaagcctaatattagtg--
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TGATGTCTTCTCTTTTGGAGTTGTCCTTCTGGAGCTTATTACTGGACGGAAACCTGTGGATGCATCTCAACCCGTGGGTGATGAGAGTCTAGTTGAA-TGGgtaagttatattgt--tgatgaccctgatttaagttctcttttgttacaaatttctaaaatgctaatttc-ttttcagacttgcatgaactagtagtacatctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9258714|gb|BE346861.1|BE346861EST: GCCAGTAGATGCATCTCAACCTTTGGGAGATGAGAGCTTAGTTG-AATGG GCTCGACCTTTACTGAGTCATGCACTCGACACTGAGGAATTCGATAGTTTG
genomic: GCCAGTAGATGCATCTCAACCTTTGGGAGATGAGAGCTTAGTTGAAATGGgtacatatag ... tttttttcagGCTCGACCTTTACTGAGTCATGCACTCGACACTGAGGAATTCGATAGTTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGTATATTCTTTTGGAGTTGTGCTTTTGGAACTAATTACTGGACGGAAGCCAGTAGATGCATCTCAACCTTTGGGAGATGAGAGCTTAGTTGAAATGGgtacatatagatgccatgccagtcttgcttttatcactcttttgctagtgtagctatctttttttcctaatctttgtgtttgggaagcctaatattagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT