Sequence
atgc intronic sequence ATGC exonic sequenceACATTTGATGCTGTTGACGGGAAGCAAGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtgattttcctgcattgtgtttttcattctattatttttcattatgcttacctgtttattattaatgaagatgttttcaactgtatttgcag
Basic information
species | Glycine max |
transcript | GLYMA02G14210.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 5
ACATTTGATGCTGTTGACGGGAAGCAAGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtgattttcctgcattgtgtttttcattctattatttttcattatgcttacctgtttattattaatgaagatgttttcaactgtatttgcag
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ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGgtgatttatttttcccatgttcctcctttgattatctgttttca-gtttgtttctagattttt--ctgacatgtgttccaata---ttgcag
upper sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0010g00950.t01 (Vitis vinifera), 5'ss of exon 6
ACATTTGATGCTGTTGACGGGAAGCAAGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtgattttcctgcattgtgtttttcattctattatttttcattatgcttacctgtttattattaatgaagatgttttcaactgtatttgcag
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ACTTTTGATGCTGTTGATGGGAAGCAAGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATGgtgatttccccttgtcatatatcttattttggcattttgaagt---tctgaatttcaaagggagatatatattgacacatgatttattgcag
upper sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S269_30V6.1 (Physcomitrella patens), 5'ss of exon 6
ACATTTGATGCTGTTGACGGGAAGCAAGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtga----ttttcctgcatt---gtgtttttcattctattatttttcattatgcttacctgttta-ttattaatgaagatgttttcaactgtatttgcag
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ACCTTTGATGCTGTTGATGGGAAACAAGCTAGGCGGACAAATTCGTCGAGTCCTCTTGGAGAACTTTTTGATCACGgtaaacagctttgttgaactcgtaagctgctggtggatttatcaggcatgttgtcccttagttcacttatcagtgcgtaggcactcttacatatgtaaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192327207|gb|FK018089.1|FK018089EST: AGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATG GGTGTGACGCACTTGCTTGCACA
genomic: AGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtgattttcc ... gtatttgcagGGTGTGACGCACTTGCTTGCACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACATTTGATGCTGTTGACGGGAAGCAAGCTAGACGAACAAATTCCTCAAGCCCATTGGGGGAGCTCTTTGATCATGgtgattttcctgcattgtgtttttcattctattatttttcattatgcttacctgtttattattaatgaagatgttttcaactgtatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT